RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 EIF4HQ15056 248 aaKnown RBP15.77■□□□□ 0.12
LIMS3-201ENST00000437679 GEN1Q17RS7 908 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 MPP7Q5T2T1 576 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 NAA35Q5VZE5 725 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 NADSYN1Q6IA69 706 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 RASSF3Q86WH2 238 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 PGBD3Q8N328 593 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 DCLK2Q8N568 766 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 ATP6V0D2Q8N8Y2 350 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 ZNF557Q8N988 423 aaPredicted RBP15.77■□□□□ 0.12
LIMS3-201ENST00000437679 HJURPQ8NCD3 748 aaPredicted RBP15.77■□□□□ 0.12
LIMS3-201ENST00000437679 MDGA1Q8NFP4 955 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 SLC20A1Q8WUM9 679 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 BTN2A3PQ96KV6 586 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 TPSD1Q9BZJ3 242 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 NOCTQ9UK39 431 aaKnown RBP15.77■□□□□ 0.12
LIMS3-201ENST00000437679 HCN2Q9UL51 889 aa15.77■□□□□ 0.12
LIMS3-201ENST00000437679 ZNF292O60281 2723 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 SYNJ2BP-COX16A0A087WUM0 186 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 TIMM44O43615 452 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 RETP07949 1114 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 ABCB4P21439 1286 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 CCR1P32246 355 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 SCNN1AP37088 669 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 SGSHP51688 502 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 RNASE9P60153 205 aaKnown RBP15.76■□□□□ 0.11
LIMS3-201ENST00000437679 PITX1P78337 314 aaPredicted RBP15.76■□□□□ 0.11
LIMS3-201ENST00000437679 MTA1Q13330 715 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 SKOR2Q2VWA4 1001 aaPredicted RBP15.76■□□□□ 0.11
LIMS3-201ENST00000437679 FAM102AQ5T9C2 384 aaPredicted RBP15.76■□□□□ 0.11
LIMS3-201ENST00000437679 TRIM72Q6ZMU5 477 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 C11orf74Q86VG3 221 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 CCDC117Q8IWD4 279 aaPredicted RBP15.76■□□□□ 0.11
LIMS3-201ENST00000437679 FAM160A2Q8N612 972 aaPredicted RBP15.76■□□□□ 0.11
LIMS3-201ENST00000437679 GPR161Q8N6U8 529 aaKnown RBP15.76■□□□□ 0.11
LIMS3-201ENST00000437679 WFIKKN2Q8TEU8 576 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 HMGB4Q8WW32 186 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 CPA5Q8WXQ8 436 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 ACOX2Q99424 681 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 CIPCQ9C0C6 399 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 NUCKS1Q9H1E3 243 aaKnown RBP15.76■□□□□ 0.11
LIMS3-201ENST00000437679 RTN4Q9NQC3 1192 aaKnown RBP15.76■□□□□ 0.11
LIMS3-201ENST00000437679 ELOVL2Q9NXB9 296 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 CACNA2D2Q9NY47 1150 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 RRN3Q9NYV6 651 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.76■□□□□ 0.11
LIMS3-201ENST00000437679 COX16Q9P0S2 106 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 STIM2Q9P246 746 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 STAP1Q9ULZ2 295 aa15.76■□□□□ 0.11
LIMS3-201ENST00000437679 FAM170AA1A519 330 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 M0QYT0 321 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 TEX33O43247 280 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 CCDC172P0C7W6 258 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 CHRNB2P17787 502 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 MATKP42679 507 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 FMO1Q01740 532 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 NME3Q13232 169 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 EIF4EBP2Q13542 120 aaPredicted RBP15.75■□□□□ 0.11
LIMS3-201ENST00000437679 IQCB1Q15051 598 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 MS4A13Q5J8X5 152 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 RAP1GAP2Q684P5 730 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 KBTBD6Q86V97 674 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 CHSY1Q86X52 802 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 XYLT1Q86Y38 959 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 MFN1Q8IWA4 741 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 GABRG3Q99928 467 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 ABCB8Q9NUT2 735 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 THAP10Q9P2Z0 257 aaPredicted RBP15.75■□□□□ 0.11
LIMS3-201ENST00000437679 STON1Q9Y6Q2 735 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 RALGAPA1Q6GYQ0 2036 aa15.75■□□□□ 0.11
LIMS3-201ENST00000437679 KCNU1A8MYU2 1149 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 F5H5T6 163 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 GOLGA8SH3BPF8 625 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 RHOBTB1O94844 696 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 CAVIN2O95810 425 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 SERPINC1P01008 464 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 CYP1A1P04798 512 aaPredicted RBP15.74■□□□□ 0.11
LIMS3-201ENST00000437679 PABPC1P11940 636 aaKnown RBP15.74■□□□□ 0.11
LIMS3-201ENST00000437679 TACR2P21452 398 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 HLA-FP30511 346 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 RPS24P62847 133 aaKnown RBP15.74■□□□□ 0.11
LIMS3-201ENST00000437679 BYSLQ13895 437 aaKnown RBP15.74■□□□□ 0.11
LIMS3-201ENST00000437679 STARD3Q14849 445 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 ELF2Q15723 593 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 C2CD6Q53TS8 623 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 SND1Q7KZF4 910 aaKnown RBP eCLIP15.74■□□□□ 0.11
LIMS3-201ENST00000437679 CHST9Q7L1S5 443 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 KIAA2013Q8IYS2 634 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 LGI2Q8N0V4 545 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 AHI1Q8N157 1196 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.74■□□□□ 0.11
LIMS3-201ENST00000437679 LOXL4Q96JB6 756 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 ZC3H10Q96K80 434 aaKnown RBP15.74■□□□□ 0.11
LIMS3-201ENST00000437679 SPACA7Q96KW9 195 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 PRICKLE1Q96MT3 831 aaPredicted RBP15.74■□□□□ 0.11
LIMS3-201ENST00000437679 CBX8Q9HC52 389 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 TMEM51Q9NW97 253 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 XPO7Q9UIA9 1087 aaKnown RBP15.74■□□□□ 0.11
LIMS3-201ENST00000437679 GGA2Q9UJY4 613 aa15.74■□□□□ 0.11
LIMS3-201ENST00000437679 INVSQ9Y283 1065 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms