RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 NME3Q13232 169 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 MLF2Q15773 248 aaPredicted RBP12.89□□□□□ -0.35
USP40-205ENST00000430158 C5orf22Q49AR2 442 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 BRMS1LQ5PSV4 323 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 PIK3R6Q5UE93 754 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 FYB2Q5VWT5 728 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 CYP4V2Q6ZWL3 525 aaPredicted RBP12.89□□□□□ -0.35
USP40-205ENST00000430158 H2AFVQ71UI9 128 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 C12orf40Q86WS4 652 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 PHTF2Q8N3S3 785 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 TTC8Q8TAM2 541 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 BTN2A3PQ96KV6 586 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 BAG1Q99933 345 aaPredicted RBP12.89□□□□□ -0.35
USP40-205ENST00000430158 IRX2Q9BZI1 471 aaPredicted RBP12.89□□□□□ -0.35
USP40-205ENST00000430158 DEF6Q9H4E7 631 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 C8orf33Q9H7E9 229 aaPredicted RBP12.89□□□□□ -0.35
USP40-205ENST00000430158 FBRSL1Q9HCM7 1045 aaKnown RBP12.89□□□□□ -0.35
USP40-205ENST00000430158 ARHGEF3Q9NR81 526 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 TMPRSS4Q9NRS4 437 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 TMEM51Q9NW97 253 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 INTUQ9ULD6 942 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 CA14Q9ULX7 337 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 PIAS3Q9Y6X2 628 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 NUP205Q92621 2012 aa12.89□□□□□ -0.35
USP40-205ENST00000430158 SYNJ2BP-COX16A0A087WUM0 186 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 RCCD1A6NED2 376 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 TMEM221A6NGB7 291 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 SPECC1L-ADORA2AF8WAN1 911 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 M0R296 226 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 TRDMT1O14717 391 aaKnown RBP12.88□□□□□ -0.35
USP40-205ENST00000430158 PAGE1O75459 146 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 MTA2O94776 668 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 NDUFA10O95299 355 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 CISD3P0C7P0 127 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 SLC2A3P11169 496 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 CCR1P32246 355 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 SGSHP51688 502 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 VCPP55072 806 aaKnown RBP12.88□□□□□ -0.35
USP40-205ENST00000430158 DEUP1Q05D60 604 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 MS4A13Q5J8X5 152 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 C10orf76Q5T2E6 689 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 RFWD3Q6PCD5 774 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 DCUN1D2Q6PH85 259 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 C14orf80Q86SX3 495 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 RALGPS2Q86X27 583 aaPredicted RBP12.88□□□□□ -0.35
USP40-205ENST00000430158 SIX5Q8N196 739 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 CPA6Q8N4T0 437 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 FAM172AQ8WUF8 416 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 EZH1Q92800 747 aaPredicted RBP12.88□□□□□ -0.35
USP40-205ENST00000430158 PRICKLE1Q96MT3 831 aaPredicted RBP12.88□□□□□ -0.35
USP40-205ENST00000430158 NUP85Q9BW27 656 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 MAGEB5Q9BZ81 275 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 MRPL47Q9HD33 250 aaKnown RBP12.88□□□□□ -0.35
USP40-205ENST00000430158 COX16Q9P0S2 106 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 MYO1AQ9UBC5 1043 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 CLEC4EQ9ULY5 219 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 PCDHA13Q9Y5I0 950 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 SCINQ9Y6U3 715 aa12.88□□□□□ -0.35
USP40-205ENST00000430158 A0A0A0MRY4 1105 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 CACNG3O60359 315 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 ADH1CP00326 375 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 ADH5P11766 374 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 CD72P21854 359 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 HOXD9P28356 352 aaPredicted RBP12.87□□□□□ -0.35
USP40-205ENST00000430158 ADRA1BP35368 520 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 CHKAP35790 457 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 SLC6A11P48066 632 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 SLC11A2P49281 568 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 SCAPQ12770 1279 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 CWF19L1Q69YN2 538 aaKnown RBP12.87□□□□□ -0.35
USP40-205ENST00000430158 TPRG1Q6ZUI0 275 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 BMP8AQ7Z5Y6 402 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 FAM131BQ86XD5 332 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 CPNE8Q86YQ8 564 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 LRRC8AQ8IWT6 810 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 CCDC185Q8N715 623 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 NIPA2Q8N8Q9 360 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 ATP6V0D2Q8N8Y2 350 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 CSGALNACT1Q8TDX6 532 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 NTAN1Q96AB6 310 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 RNF25Q96BH1 459 aaPredicted RBP12.87□□□□□ -0.35
USP40-205ENST00000430158 MSANTD3Q96H12 275 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 BTBD6Q96KE9 485 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 LMLNQ96KR4 655 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 C1orf74Q96LT6 269 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 TKTL2Q9H0I9 626 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 WDCPQ9H6R7 721 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 OSGEPQ9NPF4 335 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 UVRAGQ9P2Y5 699 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 FBXL21Q9UKT6 434 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 TFR2Q9UP52 801 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 MTF2Q9Y483 593 aaPredicted RBP12.87□□□□□ -0.35
USP40-205ENST00000430158 SNX10Q9Y5X0 201 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 HS3ST4Q9Y661 456 aa12.87□□□□□ -0.35
USP40-205ENST00000430158 TRIM24O15164 1050 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 LRCH4O75427 683 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 MOCS2O96007 188 aaPredicted RBP12.86□□□□□ -0.35
USP40-205ENST00000430158 APOEP02649 317 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 TCF4P15884 667 aa12.86□□□□□ -0.35
USP40-205ENST00000430158 TACR2P21452 398 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms