RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 ARMC4Q5T2S8 1044 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 TTLL5Q6EMB2 1281 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 TAF2Q6P1X5 1199 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 CD163Q86VB7 1156 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 BEND7Q8N7W2 519 aaPredicted RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 FAM133AQ8N9E0 248 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 PDPRQ8NCN5 879 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 OR7D4Q8NG98 312 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 SMARCC2Q8TAQ2 1214 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 CALML4Q96GE6 196 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 EIF3CQ99613 913 aaKnown RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 RTKNQ9BST9 563 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 MRPL9Q9BYD2 267 aaKnown RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 FAM129AQ9BZQ8 928 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 KLHL4Q9C0H6 718 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 A1CFQ9NQ94 594 aaKnown RBP2.78□□□□□ -1.96
MCF2-204ENST00000414978 TMOD4Q9NZQ9 345 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 NAALADL1Q9UQQ1 740 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 ZNF711Q9Y462 761 aa2.78□□□□□ -1.96
MCF2-204ENST00000414978 DLG5Q8TDM6 1919 aa2.78□□□□□ -1.97
MCF2-204ENST00000414978 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 MANSC4A6NHS7 340 aaPredicted RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 FAM90A20PA6NIJ5 464 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 RRP9O43818 475 aaKnown RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 RPP40O75818 363 aaKnown RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 PNLIPP16233 465 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 ATP5JP18859 108 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 HK1P19367 917 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 NFKBIAP25963 317 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 SERPINA4P29622 427 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 ATP6V1E1P36543 226 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 MEOX1P50221 254 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 UBASH3AP57075 661 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 DLG4P78352 724 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 MC1RQ01726 317 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 MPP3Q13368 585 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 CAMK2DQ13557 499 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 TNIP1Q15025 636 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 RASA2Q15283 850 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 LY6KQ17RY6 165 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 C1orf141Q5JVX7 400 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 ATPAF1Q5TC12 328 aaPredicted RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 ACAD10Q6JQN1 1059 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 ZC3H14Q6PJT7 736 aaKnown RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 LARP4Q71RC2 724 aaKnown RBP eCLIP2.77□□□□□ -1.97
MCF2-204ENST00000414978 SMIM5Q71RC9 77 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 GPR149Q86SP6 731 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 TMEFF1Q8IYR6 380 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 CCDC191Q8NCU4 936 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 PPP1R14CQ8TAE6 165 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 NCSTNQ92542 709 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 ASIC4Q96FT7 647 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 APOPT1Q96IL0 206 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 PPP1R9BQ96SB3 815 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 DIRC2Q96SL1 478 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 ITPAQ9BY32 194 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 VPS16Q9H269 839 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 CCDC134Q9H6E4 229 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 SERHLQ9NQF3 203 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 PRDM8Q9NQV8 689 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 FBXO34Q9NWN3 711 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 LMCD1Q9NZU5 365 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 XPR1Q9UBH6 696 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 PCDHA10Q9Y5I2 948 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 AK9Q5TCS8 1911 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 A0A0A6YYJ9 748 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 PI4KAP2A4QPH2 592 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 H3BNC9 293 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 DKC1O60832 514 aaKnown RBP eCLIP2.77□□□□□ -1.97
MCF2-204ENST00000414978 VIPP01282 170 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 SLC4A1P02730 911 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 WEE2P0C1S8 567 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 ZNF888P0CJ79 500 aaPredicted RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 EPS15P42566 896 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 PXNP49023 591 aaPredicted RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 NLRP5P59047 1200 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 UBXN2AP68543 259 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 RUNX2Q13950 521 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 DCTN1Q14203 1278 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 SSPNQ14714 243 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 GALNTL6Q49A17 601 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 EMC4Q5J8M3 183 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 KANK2Q63ZY3 851 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 SLC30A6Q6NXT4 461 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 DCLRE1AQ6PJP8 1040 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 NHLRC1Q6VVB1 395 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 IPMKQ8NFU5 416 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 MRPL38Q96DV4 380 aaKnown RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 CNDP2Q96KP4 475 aaKnown RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 ZNF518BQ9C0D4 1074 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 SERTAD3Q9UJW9 196 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 BAG5Q9UL15 447 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 SNX5Q9Y5X3 404 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 HEG1Q9ULI3 1381 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 IFNL4K9M1U5 179 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 SLC16A6O15403 523 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 ADAM20O43506 726 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 MPOP05164 745 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 IFNAR1P17181 557 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 TBXAS1P24557 533 aaPredicted RBP2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms