RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 CDK17Q00537 523 aa15.38■□□□□ 0.05
LIMS4-201ENST00000413601 C2CD6Q53TS8 623 aa15.38■□□□□ 0.05
LIMS4-201ENST00000413601 NAA35Q5VZE5 725 aa15.38■□□□□ 0.05
LIMS4-201ENST00000413601 SLC26A9Q7LBE3 791 aa15.38■□□□□ 0.05
LIMS4-201ENST00000413601 CACNA2D4Q7Z3S7 1137 aa15.38■□□□□ 0.05
LIMS4-201ENST00000413601 ERICH1Q86X53 443 aa15.38■□□□□ 0.05
LIMS4-201ENST00000413601 C18orf8Q96DM3 657 aa15.38■□□□□ 0.05
LIMS4-201ENST00000413601 MYEOVQ96EZ4 313 aa15.38■□□□□ 0.05
LIMS4-201ENST00000413601 DDX50Q9BQ39 737 aaKnown RBP15.38■□□□□ 0.05
LIMS4-201ENST00000413601 NUCKS1Q9H1E3 243 aaKnown RBP15.38■□□□□ 0.05
LIMS4-201ENST00000413601 FAM204AQ9H8W3 233 aa15.38■□□□□ 0.05
LIMS4-201ENST00000413601 CACNA2D2Q9NY47 1150 aa15.38■□□□□ 0.05
LIMS4-201ENST00000413601 COX16Q9P0S2 106 aa15.38■□□□□ 0.05
LIMS4-201ENST00000413601 STIM2Q9P246 746 aa15.38■□□□□ 0.05
LIMS4-201ENST00000413601 BCCIPQ9P287 314 aaKnown RBP eCLIP15.38■□□□□ 0.05
LIMS4-201ENST00000413601 MUC22E2RYF6 1773 aaPredicted RBP15.38■□□□□ 0.05
LIMS4-201ENST00000413601 A0A1W2PQF6 199 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 DAB1O75553 588 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 CHRNB2P17787 502 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 HLA-FP30511 346 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 RNASE9P60153 205 aaKnown RBP15.37■□□□□ 0.05
LIMS4-201ENST00000413601 NOMO3P69849 1222 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 CDR2Q01850 454 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 EIF4EBP2Q13542 120 aaPredicted RBP15.37■□□□□ 0.05
LIMS4-201ENST00000413601 IQCB1Q15051 598 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 USP39Q53GS9 565 aaKnown RBP15.37■□□□□ 0.05
LIMS4-201ENST00000413601 TMEM215Q68D42 235 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 KIAA1211LQ6NV74 962 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 ZNF677Q86XU0 584 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 XYLT1Q86Y38 959 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 ZDHHC17Q8IUH5 632 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 CFAP52Q8N1V2 620 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 PGBD3Q8N328 593 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 ZNF397Q8NF99 534 aaPredicted RBP15.37■□□□□ 0.05
LIMS4-201ENST00000413601 WFDC5Q8TCV5 224 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 UCMAQ8WVF2 138 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 SORCS1Q8WY21 1168 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 PRICKLE1Q96MT3 831 aaPredicted RBP15.37■□□□□ 0.05
LIMS4-201ENST00000413601 GABRG3Q99928 467 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 CIPCQ9C0C6 399 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 ABCB8Q9NUT2 735 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 DDIT4Q9NX09 232 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 ELOVL2Q9NXB9 296 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 RAD54BQ9Y620 910 aa15.37■□□□□ 0.05
LIMS4-201ENST00000413601 TNRC6BQ9UPQ9 1833 aaKnown RBP15.37■□□□□ 0.05
LIMS4-201ENST00000413601 EP300Q09472 2414 aaPredicted RBP15.37■□□□□ 0.05
LIMS4-201ENST00000413601 RETP07949 1114 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 GABRG2P18507 467 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 GBP1P32455 592 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 NOS2P35228 1153 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 RPS24P62847 133 aaKnown RBP15.36■□□□□ 0.05
LIMS4-201ENST00000413601 FMO1Q01740 532 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 ARID5AQ03989 594 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 SPEM2Q0P670 501 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 NME3Q13232 169 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 MS4A13Q5J8X5 152 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 MPP7Q5T2T1 576 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 FAM102AQ5T9C2 384 aaPredicted RBP15.36■□□□□ 0.05
LIMS4-201ENST00000413601 RAP1GAP2Q684P5 730 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 LGI2Q8N0V4 545 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 ATP6V0D2Q8N8Y2 350 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 HJURPQ8NCD3 748 aaPredicted RBP15.36■□□□□ 0.05
LIMS4-201ENST00000413601 OLIG1Q8TAK6 271 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 RLN3Q8WXF3 142 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 RNF34Q969K3 372 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 ZC3H10Q96K80 434 aaKnown RBP15.36■□□□□ 0.05
LIMS4-201ENST00000413601 BTN2A3PQ96KV6 586 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 IRX2Q9BZI1 471 aaPredicted RBP15.36■□□□□ 0.05
LIMS4-201ENST00000413601 DUSP15Q9H1R2 295 aaPredicted RBP15.36■□□□□ 0.05
LIMS4-201ENST00000413601 PARD6AQ9NPB6 346 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 RTN4Q9NQC3 1192 aaKnown RBP15.36■□□□□ 0.05
LIMS4-201ENST00000413601 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.36■□□□□ 0.05
LIMS4-201ENST00000413601 THAP10Q9P2Z0 257 aaPredicted RBP15.36■□□□□ 0.05
LIMS4-201ENST00000413601 STON1Q9Y6Q2 735 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 GPR179Q6PRD1 2367 aa15.36■□□□□ 0.05
LIMS4-201ENST00000413601 NYNRINQ9P2P1 1898 aaKnown RBP15.35■□□□□ 0.05
LIMS4-201ENST00000413601 FRYLO94915 3013 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 KCNU1A8MYU2 1149 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 GOLGA8SH3BPF8 625 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 M0QYT0 321 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 TIMM44O43615 452 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 CYP1A1P04798 512 aaPredicted RBP15.35■□□□□ 0.05
LIMS4-201ENST00000413601 SLC2A3P11169 496 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 TFE3P19532 575 aaPredicted RBP15.35■□□□□ 0.05
LIMS4-201ENST00000413601 PTMSP20962 102 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 ABCB4P21439 1286 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 TACR2P21452 398 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 TGM1P22735 817 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 CCR1P32246 355 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 CD70P32970 193 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 MATKP42679 507 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 IL12RB1P42701 662 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 ZNF234Q14588 700 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 EIF4HQ15056 248 aaKnown RBP15.35■□□□□ 0.05
LIMS4-201ENST00000413601 PLK5Q496M5 336 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 RNF43Q68DV7 783 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 CHST9Q7L1S5 443 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 CHSY1Q86X52 802 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 MFN1Q8IWA4 741 aa15.35■□□□□ 0.05
LIMS4-201ENST00000413601 FRMD1Q8N878 549 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms