RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ACTN2P35609 894 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 ATP5C1P36542 298 aaKnown RBP13.93□□□□□ -0.18
LIMS1-204ENST00000409441 FLT3P36888 993 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 MATKP42679 507 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 TUBP50607 506 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 SKOR1P84550 965 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 SMAD4Q13485 552 aaKnown RBP13.93□□□□□ -0.18
LIMS1-204ENST00000409441 TTMPQ5BVD1 217 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 C10orf120Q5SQS8 335 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 LEKR1Q6ZMV7 388 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 SYDE1Q6ZW31 735 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-204ENST00000409441 TADA2BQ86TJ2 420 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 CPNE8Q86YQ8 564 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 ARL14EPQ8N8R7 260 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-204ENST00000409441 RXFP2Q8WXD0 754 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 FGF13Q92913 245 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 ZSWIM3Q96MP5 696 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 MCEEQ96PE7 176 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 SLC22A12Q96S37 553 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 CDK5RAP1Q96SZ6 601 aaKnown RBP13.93□□□□□ -0.18
LIMS1-204ENST00000409441 NACA2Q9H009 215 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 PRDM6Q9NQX0 595 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 HOMER3Q9NSC5 361 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 ZDHHC18Q9NUE0 388 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.93□□□□□ -0.182e-8■■□□□ 13.8
LIMS1-204ENST00000409441 IP6K2Q9UHH9 426 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 DOCK6Q96HP0 2047 aa13.93□□□□□ -0.18
LIMS1-204ENST00000409441 BRWD1Q9NSI6 2320 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 TRAV19A0A0A6YYK7 116 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 TMEM191CA6NGB0 347 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 GOLGA6L10A6NI86 522 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 C2CD4BA6NLJ0 364 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 HMGB1P1B2RPK0 211 aaPredicted RBP13.92□□□□□ -0.18
LIMS1-204ENST00000409441 DAB1O75553 588 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 OAS1P00973 400 aaKnown RBP13.92□□□□□ -0.18
LIMS1-204ENST00000409441 RARAP10276 462 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 DDX6P26196 483 aaKnown RBP eCLIP13.92□□□□□ -0.18
LIMS1-204ENST00000409441 EMC10Q5UCC4 262 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 TRNP1Q6NT89 227 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 TTC27Q6P3X3 843 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 GET4Q7L5D6 327 aaPredicted RBP13.92□□□□□ -0.18
LIMS1-204ENST00000409441 KATNAL2Q8IYT4 538 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 ZDHHC14Q8IZN3 488 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 ARL8AQ96BM9 186 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 DDX23Q9BUQ8 820 aaKnown RBP13.92□□□□□ -0.18
LIMS1-204ENST00000409441 TXLNGYQ9BZA5 131 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 OLA1Q9NTK5 396 aaKnown RBP13.92□□□□□ -0.18
LIMS1-204ENST00000409441 SFMBT1Q9UHJ3 866 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 ZMYM5Q9UJ78 669 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 DNMT3LQ9UJW3 386 aa13.92□□□□□ -0.18
LIMS1-204ENST00000409441 NOTCH4Q99466 2003 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 MDM4O15151 490 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 PFKLP17858 780 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 CETN2P41208 172 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 EIF3BP55884 814 aaKnown RBP13.91□□□□□ -0.18
LIMS1-204ENST00000409441 TFF2Q03403 129 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 EFEMP1Q12805 493 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 UAP1Q16222 522 aaPredicted RBP13.91□□□□□ -0.18
LIMS1-204ENST00000409441 CCDC14Q49A88 953 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 KLHDC10Q6PID8 442 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 NPAS3Q8IXF0 933 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 CCDC105Q8IYK2 499 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 CMTM8Q8IZV2 173 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 EXD1Q8NHP7 514 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 GRK7Q8WTQ7 553 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 ZBTB9Q96C00 473 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 TRIM7Q9C029 511 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 TMBIM4Q9HC24 238 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 GDE1Q9NZC3 331 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 MARCH2Q9P0N8 246 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 MTRF1LQ9UGC7 380 aaKnown RBP13.91□□□□□ -0.18
LIMS1-204ENST00000409441 FEZ2Q9UHY8 353 aaPredicted RBP13.91□□□□□ -0.18
LIMS1-204ENST00000409441 CDH7Q9ULB5 785 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 NFS1Q9Y697 457 aa13.91□□□□□ -0.18
LIMS1-204ENST00000409441 ZNF638Q14966 1978 aaKnown RBP13.91□□□□□ -0.18
LIMS1-204ENST00000409441 ERICH4A6NGS2 130 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 ECEL1O95672 775 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 OLFM2O95897 454 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 CKMP06732 381 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 GPD1P21695 349 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 SDC4P31431 198 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 AVPR1AP37288 418 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 ZNF143P52747 638 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-204ENST00000409441 PITX1P78337 314 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-204ENST00000409441 OGDHQ02218 1023 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 DHX9Q08211 1270 aaKnown RBP13.9□□□□□ -0.18
LIMS1-204ENST00000409441 SLC25A52Q3SY17 297 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 LRRC38Q5VT99 294 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 PTCRAQ6ISU1 281 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-204ENST00000409441 MSANTD2Q6P1R3 559 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 MIB1Q86YT6 1006 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 ADAM32Q8TC27 787 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 DQX1Q8TE96 717 aaKnown RBP13.9□□□□□ -0.18
LIMS1-204ENST00000409441 UBLCP1Q8WVY7 318 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-204ENST00000409441 NT5C3BQ969T7 300 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 ATP6V1G3Q96LB4 118 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 CFAP57Q96MR6 1250 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 MYADMQ96S97 322 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 NPY6RQ99463 290 aa13.9□□□□□ -0.18
LIMS1-204ENST00000409441 ZMYND15Q9H091 742 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms