RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 GGCXP38435 758 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 ARL4AP40617 200 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 ZXDBP98169 803 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 FAM78AQ5JUQ0 283 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 CHSY1Q86X52 802 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 CELF5Q8N6W0 485 aaKnown RBP18.7■□□□□ 0.58
SDC1-203ENST00000403076 ADAMTS19Q8TE59 1207 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 SUSD6Q92537 303 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 PBKQ96KB5 322 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 MYADMQ96S97 322 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 EPAS1Q99814 870 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 OSBPL2Q9H1P3 480 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 KIF9Q9HAQ2 790 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 PCDH18Q9HCL0 1135 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 ZNF510Q9Y2H8 683 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 SNX10Q9Y5X0 201 aa18.7■□□□□ 0.58
SDC1-203ENST00000403076 GRXCR2A6NFK2 248 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 SRGAP2O75044 1071 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 URI1O94763 535 aaPredicted RBP18.69■□□□□ 0.58
SDC1-203ENST00000403076 KLKB1P03952 638 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 WEE1P30291 646 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 MLLT6P55198 1093 aaPredicted RBP18.69■□□□□ 0.58
SDC1-203ENST00000403076 SMAD4Q13485 552 aaKnown RBP18.69■□□□□ 0.58
SDC1-203ENST00000403076 DPYSL2Q16555 572 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 RAP1GAP2Q684P5 730 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 MFSD7Q6UXD7 560 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 LRRC31Q6UY01 552 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 HTR3DQ70Z44 454 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 AZIN2Q96A70 460 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 ASB16Q96NS5 453 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 DDX50Q9BQ39 737 aaKnown RBP18.69■□□□□ 0.58
SDC1-203ENST00000403076 CARD9Q9H257 536 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 AGO1Q9UL18 857 aaKnown RBP18.69■□□□□ 0.58
SDC1-203ENST00000403076 HS3ST4Q9Y661 456 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 GOLGA6L7A0A1B0GV03 622 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 FAM72CH0Y354 149 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 H3BRJ5 948 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 EEF2KO00418 725 aaKnown RBP18.69■□□□□ 0.58
SDC1-203ENST00000403076 DAPK3O43293 454 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 MBTPS2O43462 519 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 CD48P09326 243 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 PRLRP16471 622 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 VIPR2P41587 438 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 COPS2P61201 443 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 LLGL1Q15334 1064 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 MS4A13Q5J8X5 152 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 ACBD5Q5T8D3 534 aaPredicted RBP18.69■□□□□ 0.58
SDC1-203ENST00000403076 FAM72AQ5TYM5 149 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 PIK3R6Q5UE93 754 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 DCAF12L1Q5VU92 463 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 FAM72DQ6L9T8 149 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 SPOCD1Q6ZMY3 1216 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 OTOP3Q7RTS5 596 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 FAM72BQ86X60 149 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 C1orf74Q96LT6 269 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 MAK16Q9BXY0 300 aaKnown RBP18.69■□□□□ 0.58
SDC1-203ENST00000403076 STIM2Q9P246 746 aa18.69■□□□□ 0.58
SDC1-203ENST00000403076 ZFP37Q9Y6Q3 630 aaPredicted RBP18.69■□□□□ 0.58
SDC1-203ENST00000403076 E2F8A0AVK6 867 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 LATS1O95835 1130 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 LAMP2P13473 410 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 TACR2P21452 398 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 SP100P23497 879 aaPredicted RBP18.68■□□□□ 0.58
SDC1-203ENST00000403076 ARSEP51690 589 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 TPI1P60174 286 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 AUHQ13825 339 aaKnown RBP18.68■□□□□ 0.58
SDC1-203ENST00000403076 DPYSL3Q14195 570 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 ADGRF1Q5T601 910 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 NADSYN1Q6IA69 706 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 RWDD4Q6NW29 188 aaKnown RBP18.68■□□□□ 0.58
SDC1-203ENST00000403076 AADACL2Q6P093 401 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 LGI2Q8N0V4 545 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 ZFP14Q9HCL3 533 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 VANGL2Q9ULK5 521 aa18.68■□□□□ 0.58
SDC1-203ENST00000403076 F5H5T6 163 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 TCF3P15923 654 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 GOT1P17174 413 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 ZNF135P52742 658 aaPredicted RBP18.67■□□□□ 0.58
SDC1-203ENST00000403076 USP4Q13107 963 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 MMRN1Q13201 1228 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 ZNF77Q15935 545 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 KAZNQ674X7 775 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 Q6ZNB5 142 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 C14orf80Q86SX3 495 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 RFX6Q8HWS3 928 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 BBS7Q8IWZ6 715 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 ST13P5Q8NFI4 369 aaPredicted RBP18.67■□□□□ 0.58
SDC1-203ENST00000403076 MAFAQ8NHW3 353 aaPredicted RBP18.67■□□□□ 0.58
SDC1-203ENST00000403076 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.67■□□□□ 0.58
SDC1-203ENST00000403076 COG1Q8WTW3 980 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 CAPZA3Q96KX2 299 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 HEMGNQ9BXL5 484 aa18.67■□□□□ 0.58
SDC1-203ENST00000403076 CWC15Q9P013 229 aaKnown RBP18.67■□□□□ 0.58
SDC1-203ENST00000403076 C3orf70A6NLC5 250 aaPredicted RBP18.66■□□□□ 0.58
SDC1-203ENST00000403076 E9PAM4 449 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 TRDMT1O14717 391 aaKnown RBP18.66■□□□□ 0.58
SDC1-203ENST00000403076 ZNF185O15231 689 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 GREM1O60565 184 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 TSPAN3O60637 253 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 LRIG2O94898 1065 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms