RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 BNC1Q01954 994 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 CFHR3Q02985 330 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 NSUN2Q08J23 767 aaKnown RBP eCLIP-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 DLG1Q12959 904 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 ASPHD1Q5U4P2 390 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 TBC1D9BQ66K14 1250 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 HMBOX1Q6NT76 420 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 PTCHD4Q6ZW05 846 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 MON1BQ7L1V2 547 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 ADGRD2Q7Z7M1 963 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 NOP9Q86U38 636 aaKnown RBP-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZGPATQ8N5A5 531 aaKnown RBP-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 DCBLD1Q8N8Z6 715 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 WDR20Q8TBZ3 569 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 ST6GALNAC6Q969X2 333 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 AGAP3Q96P47 875 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 CNPPD1Q9BV87 410 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 RAB11FIP5Q9BXF6 653 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 KCTD10Q9H3F6 313 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 SLC52A2Q9HAB3 445 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 AGO4Q9HCK5 861 aaKnown RBP-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 CABP5Q9NP86 173 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 SNX15Q9NRS6 342 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 USP35Q9P2H5 1018 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 TBC1D14Q9P2M4 693 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 CPA4Q9UI42 421 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 RASAL2Q9UJF2 1139 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 TNXBP22105 4242 aa-0.31□□□□□ -2.46
RNU6-540P-201ENST00000384622 CACNA1AO00555 2505 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 PSMD14O00487 310 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 CTNND1O60716 968 aaKnown RBP-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 PMPCBO75439 489 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 PRKD3O94806 890 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 LPLP06858 475 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 ARL14EPLP0DKL9 152 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 SRCP12931 536 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 KCNA3P22001 575 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 GKP32189 559 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 SLC6A9P48067 706 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 PGFP49763 221 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 TOB1P50616 345 aaPredicted RBP-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 CTXN1P60606 82 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZP1P60852 638 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 ATP8B2P98198 1209 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 NDPQ00604 133 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 TNFAIP2Q03169 654 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZBTB16Q05516 673 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZFP36L1Q07352 338 aaKnown RBP-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 MYBPHQ13203 477 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 E2F2Q14209 437 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 TNNI3KQ59H18 835 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 HERC4Q5GLZ8 1057 aaPredicted RBP-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 FAM209AQ5JX71 171 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 SPDYCQ5MJ68 293 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 DEPDC1Q5TB30 811 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 KRT39Q6A163 491 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZNF613Q6PF04 617 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 DOK6Q6PKX4 331 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 CEACAM20Q6UY09 585 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 DDX53Q86TM3 631 aaKnown RBP-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 AHI1Q8N157 1196 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 DMBX1Q8NFW5 382 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 RASGRP4Q8TDF6 673 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 HOXB13Q92826 284 aaPredicted RBP-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 SCAMP4Q969E2 229 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 HNRNPABQ99729 332 aaKnown RBP-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 MGME1Q9BQP7 344 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 GZF1Q9H116 711 aaPredicted RBP-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 PTPRHQ9HD43 1115 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 TMEM160Q9NX00 188 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 TAAR2Q9P1P5 351 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 THEGQ9P2T0 379 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 IPO11Q9UI26 975 aaKnown RBP-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZDHHC2Q9UIJ5 367 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 EDARQ9UNE0 448 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 CHD8Q9HCK8 2581 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 PTPN13Q12923 2485 aa-0.32□□□□□ -2.46
RNU6-540P-201ENST00000384622 MAST4O15021 2626 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 USP24Q9UPU5 2620 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZFHX2Q9C0A1 2572 aaPredicted RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZNF469Q96JG9 3925 aaPredicted RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 NCOR2Q9Y618 2525 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 TCRBV16S1A1N1A0A5B0 115 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 LCHNA4D1U4 455 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 MBD3L4A6NDZ8 208 aaPredicted RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 MBD3L3A6NE82 208 aaPredicted RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 MBD3L5A6NJ08 208 aaPredicted RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 I6L893 689 aaPredicted RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 PSMD9O00233 223 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 F2RL2O00254 374 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 FYB1O15117 783 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 B4GALT2O60909 372 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 SERPINI2O75830 405 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 VNN1O95497 513 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 ZNF853P0CG23 659 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 PPIFP30405 207 aaKnown RBP-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 FLT3P36888 993 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 AMTP48728 403 aa-0.33□□□□□ -2.46
RNU6-540P-201ENST00000384622 MANFP55145 182 aaKnown RBP-0.33□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms