RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 LMLNQ96KR4 655 aa19.68■□□□□ 0.74
CKS1B-203ENST00000368439 ERGIC2Q96RQ1 377 aa19.68■□□□□ 0.74
CKS1B-203ENST00000368439 ELOVL2Q9NXB9 296 aa19.68■□□□□ 0.74
CKS1B-203ENST00000368439 CACNA2D2Q9NY47 1150 aa19.68■□□□□ 0.74
CKS1B-203ENST00000368439 INVSQ9Y283 1065 aa19.68■□□□□ 0.74
CKS1B-203ENST00000368439 DAAM1Q9Y4D1 1078 aa19.68■□□□□ 0.74
CKS1B-203ENST00000368439 DNAH14Q0VDD8 3507 aa19.68■□□□□ 0.74
CKS1B-203ENST00000368439 LRP3O75074 770 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 GRAP2O75791 330 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 MMEP08473 750 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 GABRG2P18507 467 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 BCKDHBP21953 392 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 P2RY2P41231 377 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 USP39Q53GS9 565 aaKnown RBP19.67■□□□□ 0.74
CKS1B-203ENST00000368439 ZC3H12AQ5D1E8 599 aaKnown RBP19.67■□□□□ 0.74
CKS1B-203ENST00000368439 ANKRD20A12PQ8NF67 263 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 IPO4Q8TEX9 1081 aaKnown RBP19.67■□□□□ 0.74
CKS1B-203ENST00000368439 SLC20A1Q8WUM9 679 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 HMGB4Q8WW32 186 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 ADAM33Q9BZ11 813 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 NUCKS1Q9H1E3 243 aaKnown RBP19.67■□□□□ 0.74
CKS1B-203ENST00000368439 NLRC4Q9NPP4 1024 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 CEP83Q9Y592 693 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 RAD54BQ9Y620 910 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 STON1Q9Y6Q2 735 aa19.67■□□□□ 0.74
CKS1B-203ENST00000368439 CEP192Q8TEP8 1941 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 KCNU1A8MYU2 1149 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 TBL1XO60907 577 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 DAB1O75553 588 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 GFPT2O94808 682 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 LSM8O95777 96 aaKnown RBP19.66■□□□□ 0.74
CKS1B-203ENST00000368439 CHRNB2P17787 502 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 CDK11BP21127 795 aaKnown RBP19.66■□□□□ 0.74
CKS1B-203ENST00000368439 SOX5P35711 763 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 IL12RB1P42701 662 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 SNX16P57768 344 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 NOMO3P69849 1222 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 EIF4HQ15056 248 aaKnown RBP19.66■□□□□ 0.74
CKS1B-203ENST00000368439 MAP7D1Q3KQU3 841 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 MS4A13Q5J8X5 152 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 OTUD1Q5VV17 481 aaPredicted RBP19.66■□□□□ 0.74
CKS1B-203ENST00000368439 ADIPOR2Q86V24 386 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 ZDHHC17Q8IUH5 632 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 FRMD1Q8N878 549 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 RLN3Q8WXF3 142 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 SORCS1Q8WY21 1168 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 CALCOCO1Q9P1Z2 691 aa19.66■□□□□ 0.74
CKS1B-203ENST00000368439 NPC1O15118 1278 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 MOCS2O96007 188 aaPredicted RBP19.65■□□□□ 0.74
CKS1B-203ENST00000368439 CYP1A1P04798 512 aaPredicted RBP19.65■□□□□ 0.74
CKS1B-203ENST00000368439 RPS24P62847 133 aaKnown RBP19.65■□□□□ 0.74
CKS1B-203ENST00000368439 CDK17Q00537 523 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 FMO1Q01740 532 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 UBXN1Q04323 297 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 ZNF234Q14588 700 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 CSRP2Q16527 193 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 KLHL40Q2TBA0 621 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 PMS2CLQ68D20 193 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 SDE2Q6IQ49 451 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 ZNF677Q86XU0 584 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 XYLT1Q86Y38 959 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 HJURPQ8NCD3 748 aaPredicted RBP19.65■□□□□ 0.74
CKS1B-203ENST00000368439 BTN2A3PQ96KV6 586 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 PRMT1Q99873 361 aaKnown RBP19.65■□□□□ 0.74
CKS1B-203ENST00000368439 DDX50Q9BQ39 737 aaKnown RBP19.65■□□□□ 0.74
CKS1B-203ENST00000368439 NAT10Q9H0A0 1025 aaKnown RBP19.65■□□□□ 0.74
CKS1B-203ENST00000368439 ARRDC1-AS1Q9H2J1 176 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 PDCL3Q9H2J4 239 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 SYNCQ9H7C4 482 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 SEMA4GQ9NTN9 838 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 ABCB8Q9NUT2 735 aa19.65■□□□□ 0.74
CKS1B-203ENST00000368439 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.65■□□□□ 0.74
CKS1B-203ENST00000368439 BCCIPQ9P287 314 aaKnown RBP eCLIP19.65■□□□□ 0.74
CKS1B-203ENST00000368439 MBD1Q9UIS9 605 aaPredicted RBP19.65■□□□□ 0.74
CKS1B-203ENST00000368439 FAM170AA1A519 330 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 TIMM44O43615 452 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 APOEP02649 317 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 NDUFV2P19404 249 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 CD70P32970 193 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 NOS2P35228 1153 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 SCNN1AP37088 669 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 CDR2Q01850 454 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 C2CD6Q53TS8 623 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 PLA2G2CQ5R387 149 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 C11orf74Q86VG3 221 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 ERICH1Q86X53 443 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 WFIKKN2Q8TEU8 576 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 UCMAQ8WVF2 138 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 NT5C3BQ969T7 300 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 RMDN1Q96DB5 314 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 C18orf8Q96DM3 657 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 ERLEC1Q96DZ1 483 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 NPY6RQ99463 290 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 FAM204AQ9H8W3 233 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 DDIT4Q9NX09 232 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 GGA2Q9UJY4 613 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 USP18Q9UMW8 372 aa19.64■□□□□ 0.73
CKS1B-203ENST00000368439 TEX33O43247 280 aa19.63■□□□□ 0.73
CKS1B-203ENST00000368439 RHOBTB1O94844 696 aa19.63■□□□□ 0.73
CKS1B-203ENST00000368439 PABPC1P11940 636 aaKnown RBP19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms