RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 GPX6P59796 221 aa23.14■■□□□ 1.3
PDLIM2-203ENST00000339162 PAFAH1B3Q15102 231 aaKnown RBP23.14■■□□□ 1.3
PDLIM2-203ENST00000339162 MDM1Q8TC05 714 aa23.14■■□□□ 1.3
PDLIM2-203ENST00000339162 MRRFQ96E11 262 aaKnown RBP23.14■■□□□ 1.3
PDLIM2-203ENST00000339162 TMEM175Q9BSA9 504 aa23.14■■□□□ 1.3
PDLIM2-203ENST00000339162 TTPALQ9BTX7 342 aa23.14■■□□□ 1.3
PDLIM2-203ENST00000339162 GCATO75600 419 aa23.14■■□□□ 1.29
PDLIM2-203ENST00000339162 RPL17P18621 184 aaKnown RBP23.14■■□□□ 1.29
PDLIM2-203ENST00000339162 EIF4EBP2Q13542 120 aaPredicted RBP23.14■■□□□ 1.29
PDLIM2-203ENST00000339162 IGDCC3Q8IVU1 814 aa23.14■■□□□ 1.29
PDLIM2-203ENST00000339162 CYP4X1Q8N118 509 aa23.14■■□□□ 1.29
PDLIM2-203ENST00000339162 TTC25Q96NG3 672 aa23.14■■□□□ 1.29
PDLIM2-203ENST00000339162 SERPINB12Q96P63 405 aa23.14■■□□□ 1.29
PDLIM2-203ENST00000339162 KLC2Q9H0B6 622 aa23.14■■□□□ 1.29
PDLIM2-203ENST00000339162 GMIPQ9P107 970 aa23.14■■□□□ 1.29
PDLIM2-203ENST00000339162 CDY1Q9Y6F8 540 aa23.14■■□□□ 1.29
PDLIM2-203ENST00000339162 CLUHO75153 1309 aa23.14■■□□□ 1.29
PDLIM2-203ENST00000339162 A0A087WUV0 522 aaPredicted RBP23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 CHADO15335 359 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 ADAM12O43184 909 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 AGTP01019 485 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 ITGB8P26012 769 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 DUSP4Q13115 394 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 MFSD5Q6N075 450 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 DENND5BQ6ZUT9 1274 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 BZW1Q7L1Q6 419 aaKnown RBP23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 CROCCP2Q86T23 111 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 P2RY11Q96G91 374 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 PAWRQ96IZ0 340 aaKnown RBP23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 TRIM62Q9BVG3 475 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 SLC12A6Q9UHW9 1150 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 CHMP2BQ9UQN3 213 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 SCML2Q9UQR0 700 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 EXOC1LA0A1B0GW35 172 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 C2CD2LO14523 706 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 PARNO95453 639 aaKnown RBP23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 MOCS2O96007 188 aaPredicted RBP23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 MDH1P40925 334 aaKnown RBP23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 GPR17Q13304 367 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 ARHGEF18Q6ZSZ5 1173 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 BEND5Q7L4P6 421 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 ARFGAP2Q8N6H7 521 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 DEPDC1BQ8WUY9 529 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 EPAS1Q99814 870 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 SMOC2Q9H3U7 446 aa23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 COL4A4P53420 1690 aaPredicted RBP23.13■■□□□ 1.29
PDLIM2-203ENST00000339162 MICAL3Q7RTP6 2002 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 MYO16Q9Y6X6 1858 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 C5orf60A6NFR6 353 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 E7ESA3 106 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 POC1B-GALNT4F8VUJ3 575 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 TBC1D4O60343 1298 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 ABHD2P08910 425 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 STAT4Q14765 748 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 TNFAIP8L3Q5GJ75 292 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 ANKRD20A2Q5SQ80 823 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 ANKRD20A1Q5TYW2 823 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 ANKRD20A3Q5VUR7 823 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 RWDD4Q6NW29 188 aaKnown RBP23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 MON1AQ86VX9 555 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 VPS52Q8N1B4 723 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 AGGF1Q8N302 714 aaeCLIP23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 SELENOSQ9BQE4 189 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 CCDC77Q9BR77 488 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 KIAA0100Q14667 2235 aaKnown RBP23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 HACD1B0YJ81 288 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 KCNK1O00180 336 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 RNF103O00237 685 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 PAGE1O75459 146 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 CLTBP09497 229 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 CREB1P16220 341 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 ELK3P41970 407 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 MAGEA11P43364 429 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 ELAVL2Q12926 359 aaKnown RBP23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 PDK1Q15118 436 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 PRKD1Q15139 912 aaPredicted RBP23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 LRRC26Q2I0M4 334 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 CNKSR3Q6P9H4 555 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 LRRC31Q6UY01 552 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 EXOC3L1Q86VI1 746 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 VN1R3Q9BXE9 311 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 FBXO44Q9H4M3 255 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 CWH43Q9H720 699 aa23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 PRDM5Q9NQX1 630 aaPredicted RBP23.12■■□□□ 1.29
PDLIM2-203ENST00000339162 TBX18O95935 607 aa23.11■■□□□ 1.29
PDLIM2-203ENST00000339162 HCAR3P49019 387 aa23.11■■□□□ 1.29
PDLIM2-203ENST00000339162 C3orf62Q6ZUJ4 267 aa23.11■■□□□ 1.29
PDLIM2-203ENST00000339162 ANKS3Q6ZW76 656 aa23.11■■□□□ 1.29
PDLIM2-203ENST00000339162 GIPC2Q8TF65 315 aa23.11■■□□□ 1.29
PDLIM2-203ENST00000339162 CELF6Q96J87 481 aaKnown RBP23.11■■□□□ 1.29
PDLIM2-203ENST00000339162 ARHGEF38Q9NXL2 777 aa23.11■■□□□ 1.29
PDLIM2-203ENST00000339162 ZMYND8Q9ULU4 1186 aaPredicted RBP23.11■■□□□ 1.29
PDLIM2-203ENST00000339162 SMAPO00193 183 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 GCAP28676 217 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 CCR1P32246 355 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 GRIA1P42261 906 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 EFTUD2Q15029 972 aaKnown RBP eCLIP23.1■■□□□ 1.296e-8■■■■□ 20.2
PDLIM2-203ENST00000339162 C1orf53Q5VUE5 145 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 PALM2Q8IXS6 379 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 ARHGEF2Q92974 986 aaKnown RBP23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms