RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 PAK5Q9P286 719 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 SRRDQ9UH36 339 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 STAP1Q9ULZ2 295 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 TRPM7Q96QT4 1865 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 DFFAO00273 331 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 DNM1LO00429 736 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 PQBP1O60828 265 aaKnown RBP12.98□□□□□ -0.33
LIMK1-201ENST00000336180 DAB1O75553 588 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 CPP00450 1065 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 TGM2P21980 687 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 CALRP27797 417 aaKnown RBP12.98□□□□□ -0.33
LIMK1-201ENST00000336180 LHX1P48742 406 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 PCBP1Q15365 356 aaKnown RBP eCLIP12.98□□□□□ -0.33
LIMK1-201ENST00000336180 MROH9Q5TGP6 573 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 RFX8Q6ZV50 586 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 DEFB128Q7Z7B8 93 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 METTL23Q86XA0 190 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 TEKT4Q8WW24 435 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 PGBD4Q96DM1 585 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 PPP1R12CQ9BZL4 782 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 WDCPQ9H6R7 721 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 WDR6Q9NNW5 1121 aaKnown RBP12.98□□□□□ -0.33
LIMK1-201ENST00000336180 MPP6Q9NZW5 540 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 TET1Q8NFU7 2136 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 TTC24A2A3L6 582 aaPredicted RBP12.98□□□□□ -0.33
LIMK1-201ENST00000336180 HHLA1C9JL84 531 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 C2CD2LO14523 706 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 PYGBP11216 843 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 NEFHP12036 1026 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 MGAT1P26572 445 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 CORO7P57737 925 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 SNX16P57768 344 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 TCTN1Q2MV58 587 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 LIMS2Q7Z4I7 341 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 TADA2BQ86TJ2 420 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 DBF4BQ8NFT6 615 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 TTC17Q96AE7 1141 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 MECRQ9BV79 373 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 NMUR1Q9HB89 426 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 NDFIP2Q9NV92 336 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 EURLQ9NYK6 297 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 KLHL8Q9P2G9 620 aaPredicted RBP12.98□□□□□ -0.33
LIMK1-201ENST00000336180 PSMC3IPQ9P2W1 217 aaPredicted RBP12.98□□□□□ -0.33
LIMK1-201ENST00000336180 IKBKGQ9Y6K9 419 aa12.98□□□□□ -0.33
LIMK1-201ENST00000336180 C2orf71A6NGG8 1288 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 FAM47DPA6NHR8 397 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 CSH1P0DML2 217 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 CSH2P0DML3 217 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 NAIF1Q69YI7 327 aaPredicted RBP12.97□□□□□ -0.33
LIMK1-201ENST00000336180 CCDC121Q6ZUS5 278 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 ZNF534Q76KX8 674 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 PCGF5Q86SE9 256 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 TMEM173Q86WV6 379 aaPredicted RBP12.97□□□□□ -0.33
LIMK1-201ENST00000336180 ZDHHC17Q8IUH5 632 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 TCP10LQ8TDR4 215 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 AZIN2Q96A70 460 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 SMARCD1Q96GM5 515 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 UPF3AQ9H1J1 476 aaKnown RBP12.97□□□□□ -0.33
LIMK1-201ENST00000336180 ATXN3LQ9H3M9 355 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 ZNF395Q9H8N7 513 aaPredicted RBP12.97□□□□□ -0.33
LIMK1-201ENST00000336180 ACSS2Q9NR19 701 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 SAMD15Q9P1V8 674 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 USP3Q9Y6I4 520 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 A0A1W2PQ45 241 aaPredicted RBP12.97□□□□□ -0.33
LIMK1-201ENST00000336180 A0A1W2PQY0 241 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 KPNA6O60684 536 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 INHBAP08476 426 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 RPL17P18621 184 aaKnown RBP12.97□□□□□ -0.33
LIMK1-201ENST00000336180 YWHAHQ04917 246 aaPredicted RBP12.97□□□□□ -0.33
LIMK1-201ENST00000336180 TUSC3Q13454 348 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 TTC31Q49AM3 519 aaPredicted RBP12.97□□□□□ -0.33
LIMK1-201ENST00000336180 INTS6LQ5JSJ4 861 aaKnown RBP12.97□□□□□ -0.33
LIMK1-201ENST00000336180 MFSD4BQ5TF39 518 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 UNC5AQ6ZN44 842 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 BHLHA9Q7RTU4 235 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 SPATA2LQ8IUW3 424 aaPredicted RBP12.97□□□□□ -0.33
LIMK1-201ENST00000336180 ZNF567Q8N184 647 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 CCDC197Q8NCU1 140 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 DCAKDQ8WVC6 231 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 COLEC11Q9BWP8 271 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 SLC24A3Q9HC58 644 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 OR12D3Q9UGF7 316 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 CDH9Q9ULB4 789 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 TEX264Q9Y6I9 313 aa12.97□□□□□ -0.33
LIMK1-201ENST00000336180 TRIM49D1C9J1S8 452 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 ATP9BO43861 1147 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 LRIG2O94898 1065 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 SLC5A3P53794 718 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 USP46P62068 366 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 NOGQ13253 232 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 DSC3Q14574 896 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 MTFR1Q15390 333 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 SEPT7Q16181 437 aaKnown RBP12.96□□□□□ -0.33
LIMK1-201ENST00000336180 TRIM71Q2Q1W2 868 aaKnown RBP12.96□□□□□ -0.33
LIMK1-201ENST00000336180 C11orf91Q3C1V1 193 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 HHATQ5VTY9 493 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 ARMC3Q5W041 872 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 CGB2Q6NT52 195 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 GLB1LQ6UWU2 654 aa12.96□□□□□ -0.33
LIMK1-201ENST00000336180 CDHR3Q6ZTQ4 885 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms