RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 TBC1D3CQ6IPX1 549 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 FBXO42Q6P3S6 717 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TMEM88Q6PEY1 159 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 PTF1AQ7RTS3 328 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 FTSJ3Q8IY81 847 aaKnown RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 LAS2Q8IYD9 372 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TBC1D3Q8IZP1 549 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 SRFBP1Q8NEF9 429 aaKnown RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 SLC2A12Q8TD20 617 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 ASB12Q8WXK4 309 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 AKAP1Q92667 903 aaKnown RBP eCLIP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TRMT61AQ96FX7 289 aaKnown RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 ZSCAN31Q96LW9 406 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 SENP7Q9BQF6 1050 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 ELOVL1Q9BW60 279 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 KRTAP4-2Q9BYR5 136 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 PRDM13Q9H4Q3 707 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TAF1DQ9H5J8 278 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 G6PC2Q9NQR9 355 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 ITM2CQ9NQX7 267 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 BAG5Q9UL15 447 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 TRPC5Q9UL62 973 aaPredicted RBP3.8□□□□□ -1.8
HMGB1-201ENST00000326004 VPS4AQ9UN37 437 aa3.8□□□□□ -1.8
HMGB1-201ENST00000326004 CUX2O14529 1486 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 AOX1Q06278 1338 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 CYP3A7-CYP3A51PA0A087WV96 503 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-201ENST00000326004 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-201ENST00000326004 SMIM22K7EJ46 135 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 M0QYT0 321 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 HNRNPRO43390 633 aaKnown RBP3.79□□□□□ -1.8
HMGB1-201ENST00000326004 IGFBP2P18065 325 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 BMP5P22003 454 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 CYP3A7P24462 503 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 NDUFS1P28331 727 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 HOXD12P35452 270 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 PCP4P48539 62 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 PTH2RP49190 550 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 PRKAA2P54646 552 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 TAS2R50P59544 299 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 TUBA4AP68366 448 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 NHLH1Q02575 133 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 RNASELQ05823 741 aaKnown RBP3.79□□□□□ -1.8
HMGB1-201ENST00000326004 CUL4BQ13620 913 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 PFKFB3Q16875 520 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-201ENST00000326004 CC2D1BQ5T0F9 858 aaKnown RBP3.79□□□□□ -1.8
HMGB1-201ENST00000326004 PRAMEF17Q5VTA0 474 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 RANBP10Q6VN20 620 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 KYAT3Q6YP21 454 aaKnown RBP3.79□□□□□ -1.8
HMGB1-201ENST00000326004 RRAGAQ7L523 313 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 CHSY1Q86X52 802 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 PRIMA1Q86XR5 153 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 C16orf71Q8IYS4 520 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-201ENST00000326004 ADPRHL1Q8NDY3 354 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 SEMA6DQ8NFY4 1073 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 HASPINQ8TF76 798 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 GOLGA1Q92805 767 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 P2RY11Q96G91 374 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 ZNF845Q96IR2 970 aaPredicted RBP3.79□□□□□ -1.8
HMGB1-201ENST00000326004 RITA1Q96K30 269 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 ASB2Q96Q27 587 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 NPAS1Q99742 590 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 PYM1Q9BRP8 204 aaKnown RBP3.79□□□□□ -1.8
HMGB1-201ENST00000326004 NUAK2Q9H093 628 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 RASSF1Q9NS23 344 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.79□□□□□ -1.8
HMGB1-201ENST00000326004 FEM1BQ9UK73 627 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 RAB21Q9UL25 225 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 SLC12A4Q9UP95 1085 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 COX11Q9Y6N1 276 aa3.79□□□□□ -1.8
HMGB1-201ENST00000326004 SPATA31A5Q5VU36 1347 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 SPATA31A6Q5VVP1 1343 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 SPATA31A7Q8IWB4 1347 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 FAM90A20PA6NIJ5 464 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 LRRC3CA6NJW4 275 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 LINC01548A6NM66 108 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 B9A039 149 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 E7EVH7 732 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 PRYO14603 147 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 NPHP1O15259 732 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 SEPT4O43236 478 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 RNF8O76064 485 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 SFPQP23246 707 aaKnown RBP eCLIP3.78□□□□□ -1.8
HMGB1-201ENST00000326004 AGTR2P50052 363 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 FOXL2P58012 376 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 FAM3BP58499 235 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-201ENST00000326004 SLC10A2Q12908 348 aaPredicted RBP3.78□□□□□ -1.8
HMGB1-201ENST00000326004 KRTAP15-1Q3LI76 137 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 CYP26C1Q6V0L0 522 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 SLC39A5Q6ZMH5 540 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 ZNF813Q6ZN06 617 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 RASGRP2Q7LDG7 609 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 RD3Q7Z3Z2 195 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 ANKS1BQ7Z6G8 1248 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 ADGRG3Q86Y34 549 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 C2CD5Q86YS7 1000 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 HERC6Q8IVU3 1022 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 PNLDC1Q8NA58 520 aaKnown RBP3.78□□□□□ -1.8
HMGB1-201ENST00000326004 ZNF398Q8TD17 642 aa3.78□□□□□ -1.8
HMGB1-201ENST00000326004 PNISRQ8TF01 805 aaKnown RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms