RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PHF11Q9UIL8 331 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 SORCS3Q9UPU3 1222 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 KDM6AO15550 1401 aaPredicted RBP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 RECQL5O94762 991 aaPredicted RBP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ZNF24P17028 368 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 PRKCEQ02156 737 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 POMGNT2Q8NAT1 580 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 TMEM2Q9UHN6 1383 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 F5H5T6 163 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 STAU1O95793 577 aaKnown RBP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ASS1P00966 412 aaKnown RBP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 SPP2Q13103 211 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 PREPLQ4J6C6 727 aaPredicted RBP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 KYAT3Q6YP21 454 aaKnown RBP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 MARK2Q7KZI7 788 aaKnown RBP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 TMC3Q7Z5M5 1100 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ZNF276Q8N554 614 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 ZSCAN18Q8TBC5 510 aaPredicted RBP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 MRASO14807 208 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 SLC26A3P40879 764 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 YTHDF3Q7Z739 585 aaKnown RBP14.18□□□□□ -0.14
CSPG4-201ENST00000308508 AADATQ8N5Z0 425 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 EEF1AKMT1Q8WVE0 214 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 CAPN6Q9Y6Q1 641 aa14.18□□□□□ -0.14
CSPG4-201ENST00000308508 PRDM15P57071 1507 aaPredicted RBP14.17□□□□□ -0.14
CSPG4-201ENST00000308508 KHDRBS3O75525 346 aaKnown RBP14.17□□□□□ -0.14
CSPG4-201ENST00000308508 LSM8O95777 96 aaKnown RBP14.17□□□□□ -0.14
CSPG4-201ENST00000308508 CYP11B1P15538 503 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 RAB2AP61019 212 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 FIGNQ5HY92 759 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 IGDCC4Q8TDY8 1250 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 PYDC1Q8WXC3 89 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 RACGAP1Q9H0H5 632 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 HBS1LQ9Y450 684 aaKnown RBP14.17□□□□□ -0.14
CSPG4-201ENST00000308508 MYCP01106 439 aaPredicted RBP14.17□□□□□ -0.14
CSPG4-201ENST00000308508 NEK3P51956 506 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 ARF5P84085 180 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 ZNF543Q08ER8 600 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 REPS1Q96D71 796 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 SEMA6AQ9H2E6 1030 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 ANAPC2Q9UJX6 822 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 ARHGEF5Q12774 1597 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 ADAMTS12P58397 1594 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 ERI2A8K979 691 aaKnown RBP14.17□□□□□ -0.14
CSPG4-201ENST00000308508 ERVK-10P10266 1014 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 MYL4P12829 197 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 TCF4P15884 667 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 ADSSP30520 456 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 LRPAP1P30533 357 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 SPANXN3Q5MJ09 141 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 CYP2R1Q6VVX0 501 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 LPAR1Q92633 364 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 ZNF75CPQ92670 426 aaPredicted RBP14.17□□□□□ -0.14
CSPG4-201ENST00000308508 ANKZF1Q9H8Y5 726 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 AGPAT3Q9NRZ7 376 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 CLN6Q9NWW5 311 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 GJB7Q6PEY0 223 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 PSMA8Q8TAA3 256 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 SERAC1Q96JX3 654 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 FKBP14Q9NWM8 211 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 INVSQ9Y283 1065 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 GAS2O43903 313 aaKnown RBP14.17□□□□□ -0.14
CSPG4-201ENST00000308508 IL12AP29459 219 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 MAPK10P53779 464 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 ANKEF1Q9NU02 776 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 CCDC167Q9P0B6 97 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.17□□□□□ -0.14
CSPG4-201ENST00000308508 S100A1P23297 94 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 NAB1Q13506 487 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 GNA13Q14344 377 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 EPC2Q52LR7 807 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 EIF3MQ7L2H7 374 aaKnown RBP14.17□□□□□ -0.14
CSPG4-201ENST00000308508 WBP11Q9Y2W2 641 aaKnown RBP14.17□□□□□ -0.14
CSPG4-201ENST00000308508 MYH10P35580 1976 aa14.17□□□□□ -0.14
CSPG4-201ENST00000308508 FAM92AA1XBS5 289 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 FAM196BA6NMK8 535 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 ARHGDIBP52566 201 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 PJA1Q8NG27 643 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 PROCP04070 461 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 ITGB3P05106 788 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 TAF6P49848 677 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 GATAD2AQ86YP4 633 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 DGCR14Q96DF8 476 aaKnown RBP14.16□□□□□ -0.14
CSPG4-201ENST00000308508 NMRAL1Q9HBL8 299 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 POLR1DQ9Y2S0 133 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 DUSP10Q9Y6W6 482 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 EPN2O95208 641 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 KCNH1O95259 989 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 ALADP13716 330 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 FGFR3P22607 806 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 CASP5P51878 434 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 TKFCQ3LXA3 575 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 PRR5LQ6MZQ0 368 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 COQ6Q9Y2Z9 468 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 NRKQ7Z2Y5 1582 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.16□□□□□ -0.14
CSPG4-201ENST00000308508 SMIM22K7EJ46 135 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 KPNA5O15131 536 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 MGRN1O60291 552 aa14.16□□□□□ -0.14
CSPG4-201ENST00000308508 GLI1P08151 1106 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms