RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 FYB2Q5VWT5 728 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 CWF19L1Q69YN2 538 aaKnown RBP13.23□□□□□ -0.29
SS18-202ENST00000269138 ZNF852Q6ZMS4 543 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 STRADAQ7RTN6 431 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 C14orf80Q86SX3 495 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 CCDC170Q8IYT3 715 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 ZNF687Q8N1G0 1237 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 ARFGAP1Q8N6T3 406 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 PBXIP1Q96AQ6 731 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 PRMT1Q99873 361 aaKnown RBP13.23□□□□□ -0.29
SS18-202ENST00000269138 MAGEB5Q9BZ81 275 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 MFSD1Q9H3U5 465 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 MRPL47Q9HD33 250 aaKnown RBP13.23□□□□□ -0.29
SS18-202ENST00000269138 MARK1Q9P0L2 795 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 SLC12A6Q9UHW9 1150 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 CLEC4EQ9ULY5 219 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 TFR2Q9UP52 801 aa13.23□□□□□ -0.29
SS18-202ENST00000269138 EPN1Q9Y6I3 576 aaPredicted RBP13.23□□□□□ -0.29
SS18-202ENST00000269138 F5P12259 2224 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 FAM170BA6NMN3 283 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 MAN2B1O00754 1011 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 PI15O43692 258 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 LCA5LO95447 670 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 PENKP01210 267 aaPredicted RBP13.22□□□□□ -0.29
SS18-202ENST00000269138 TMEM253P0C7T8 217 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 TACR2P21452 398 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 MAGEA1P43355 309 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 UBXN2BQ14CS0 331 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 MS4A13Q5J8X5 152 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 BRMS1LQ5PSV4 323 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 CHSY1Q86X52 802 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 SFTPA1Q8IWL2 248 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 ETFBKMTQ8IXQ9 262 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 LGI2Q8N0V4 545 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 CFAP52Q8N1V2 620 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 CCDC185Q8N715 623 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 DDI1Q8WTU0 396 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 CTNNBL1Q8WYA6 563 aaPredicted RBP13.22□□□□□ -0.29
SS18-202ENST00000269138 TMA16Q96EY4 203 aaKnown RBP13.22□□□□□ -0.29
SS18-202ENST00000269138 PRICKLE1Q96MT3 831 aaPredicted RBP13.22□□□□□ -0.29
SS18-202ENST00000269138 P2RY13Q9BPV8 354 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 SIK2Q9H0K1 926 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 LTB4R2Q9NPC1 389 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 MYOFQ9NZM1 2061 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 HS3ST4Q9Y661 456 aa13.22□□□□□ -0.29
SS18-202ENST00000269138 ANTXRLA6NF34 631 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 GOLGA6L6A8MZA4 724 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 EIF3CLB5ME19 914 aaKnown RBP13.21□□□□□ -0.29
SS18-202ENST00000269138 TULP3O75386 442 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 NDUFA10O95299 355 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 ADRA1BP35368 520 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 CYLC1P35663 651 aaPredicted RBP13.21□□□□□ -0.29
SS18-202ENST00000269138 GSDMDP57764 484 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 RPS24P62847 133 aaKnown RBP13.21□□□□□ -0.29
SS18-202ENST00000269138 KDSRQ06136 332 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 FZD5Q13467 585 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 AUHQ13825 339 aaKnown RBP13.21□□□□□ -0.29
SS18-202ENST00000269138 GSE1Q14687 1217 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 ARTNQ5T4W7 220 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 DAB2IPQ5VWQ8 1189 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 ASTLQ6HA08 431 aaPredicted RBP13.21□□□□□ -0.29
SS18-202ENST00000269138 FSTL4Q6MZW2 842 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 SCYL2Q6P3W7 929 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 CPNE8Q86YQ8 564 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 ZNF564Q8TBZ8 553 aaPredicted RBP13.21□□□□□ -0.29
SS18-202ENST00000269138 FNIP1Q8TF40 1166 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 EZH1Q92800 747 aaPredicted RBP13.21□□□□□ -0.29
SS18-202ENST00000269138 CD101Q93033 1021 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 MSANTD3Q96H12 275 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 EIF3CQ99613 913 aaKnown RBP13.21□□□□□ -0.29
SS18-202ENST00000269138 DDX50Q9BQ39 737 aaKnown RBP13.21□□□□□ -0.29
SS18-202ENST00000269138 RBM12Q9NTZ6 932 aaKnown RBP13.21□□□□□ -0.29
SS18-202ENST00000269138 STIM2Q9P246 746 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 CTTNBP2NLQ9P2B4 639 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 ANAPC7Q9UJX3 599 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 REXO2Q9Y3B8 237 aaKnown RBP13.21□□□□□ -0.29
SS18-202ENST00000269138 PCDHA13Q9Y5I0 950 aa13.21□□□□□ -0.29
SS18-202ENST00000269138 CACNG3O60359 315 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 GPR37L1O60883 481 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 TBL1XO60907 577 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 EGFP01133 1207 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 CYBBP04839 570 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 DCNP07585 359 aaKnown RBP13.2□□□□□ -0.3
SS18-202ENST00000269138 HOXD9P28356 352 aaPredicted RBP13.2□□□□□ -0.3
SS18-202ENST00000269138 IRAK1P51617 712 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 AMPD2Q01433 879 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 SPA17Q15506 151 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 MPPE1Q53F39 396 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 TMEM196Q5HYL7 178 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 FBXL22Q6P050 247 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 BMP8AQ7Z5Y6 402 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 CIR1Q86X95 450 aaPredicted RBP13.2□□□□□ -0.3
SS18-202ENST00000269138 PHTF2Q8N3S3 785 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 ACRBPQ8NEB7 543 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 PJA1Q8NG27 643 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 SLC35G2Q8TBE7 412 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 IGSF8Q969P0 613 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 OSGEPQ9NPF4 335 aa13.2□□□□□ -0.3
SS18-202ENST00000269138 DNAJC17Q9NVM6 304 aaKnown RBP13.2□□□□□ -0.3
SS18-202ENST00000269138 VANGL2Q9ULK5 521 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms