RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CINPQ9BW66 212 aaPredicted RBP11.94□□□□□ -0.5
VPS4A-201ENST00000254950 PPM1FP49593 454 aaPredicted RBP11.94□□□□□ -0.5
VPS4A-201ENST00000254950 GYS2P54840 703 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 LAMB3Q13751 1172 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 SPARCL1Q14515 664 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 CPNE8Q86YQ8 564 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 AENQ8WTP8 325 aaKnown RBP11.94□□□□□ -0.5
VPS4A-201ENST00000254950 CLEC4CQ8WTT0 213 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 SMYD2Q9NRG4 433 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 EP400Q96L91 3159 aa11.94□□□□□ -0.5
VPS4A-201ENST00000254950 EIF3HO15372 352 aaKnown RBP eCLIP11.93□□□□□ -0.5
VPS4A-201ENST00000254950 HDCP19113 662 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 RENBPP51606 427 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 AGBL2Q5U5Z8 902 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 MARC1Q5VT66 337 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 NUDT18Q6ZVK8 323 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 RASSF3Q86WH2 238 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 CCNJLQ8IV13 435 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 ALLCQ8N6M5 410 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 SLC9A7Q96T83 725 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 C10orf88Q9H8K7 445 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 CRTAC1Q9NQ79 661 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 PSMC3IPQ9P2W1 217 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-201ENST00000254950 ZSCAN5DPP0CG00 497 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 PECAM1P16284 738 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-201ENST00000254950 TNFRSF8P28908 595 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 DUPD1Q68J44 220 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 CARNMT1Q8N4J0 409 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 ZNF669Q96BR6 464 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-201ENST00000254950 CSPG4P5Q96PW8 444 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 PRDM12Q9H4Q4 367 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 ASAH2Q9NR71 780 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 MSRAQ9UJ68 235 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 TCRBV7S2A1N4TA0A589 114 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 GLUD1P00367 558 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 RPL17P18621 184 aaKnown RBP11.93□□□□□ -0.5
VPS4A-201ENST00000254950 ST8SIA6P61647 398 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 ZKSCAN8Q15776 578 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-201ENST00000254950 SMAD1Q15797 465 aaKnown RBP11.93□□□□□ -0.5
VPS4A-201ENST00000254950 ZBTB6Q15916 424 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 CCDC38Q502W7 563 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 RAP1GAP2Q684P5 730 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 TMC3Q7Z5M5 1100 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 RIBC1Q8N443 379 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-201ENST00000254950 SH2D3CQ8N5H7 860 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 CCT6BQ92526 530 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 FCRL2Q96LA5 508 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-201ENST00000254950 CEP41Q9BYV8 373 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 SEMA4AQ9H3S1 761 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 KLHL14Q9P2G3 628 aa11.93□□□□□ -0.5
VPS4A-201ENST00000254950 ZMYND8Q9ULU4 1186 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-201ENST00000254950 R3HDM2Q9Y2K5 976 aaKnown RBP11.93□□□□□ -0.5
VPS4A-201ENST00000254950 SDR42E2A6NKP2 422 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 TTC4O95801 387 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 FAM153BP0C7A2 387 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 CTGFP29279 349 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 GATMP50440 423 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 MXRA7P84157 204 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 DPYSL3Q14195 570 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 FAM153CQ494X1 144 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 ACBD5Q5T8D3 534 aaPredicted RBP11.92□□□□□ -0.5
VPS4A-201ENST00000254950 OLFML1Q6UWY5 402 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 SLC25A41Q8N5S1 370 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 FBXO36Q8NEA4 188 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 ASIC4Q96FT7 647 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 B3GALT6Q96L58 329 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 DNAJB4Q9UDY4 337 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 FAM153AQ9UHL3 310 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 VPS28Q9UK41 221 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 MGEA5O60502 916 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 GALTP07902 379 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 POLD3Q15054 466 aaPredicted RBP11.92□□□□□ -0.5
VPS4A-201ENST00000254950 TMA16Q96EY4 203 aaKnown RBP11.92□□□□□ -0.5
VPS4A-201ENST00000254950 NT5MQ9NPB1 228 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 LOXHD1Q8IVV2 1947 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 A0A0A0MRY4 1105 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 RPL22P35268 128 aaKnown RBP11.92□□□□□ -0.5
VPS4A-201ENST00000254950 SERPINB9P50453 376 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 RABGGTBP53611 331 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 ADAM17P78536 824 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 ASPHQ12797 758 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 NOMO1Q15155 1222 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 UGP2Q16851 508 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 ANKRD20A3Q5VUR7 823 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 SDCCAG8Q86SQ7 713 aaPredicted RBP11.92□□□□□ -0.5
VPS4A-201ENST00000254950 GDAP1Q8TB36 358 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 NKD2Q969F2 451 aaPredicted RBP11.92□□□□□ -0.5
VPS4A-201ENST00000254950 SPATA13Q96N96 652 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 SMOQ99835 787 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 PLCD4Q9BRC7 762 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 PAAF1Q9BRP4 392 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 VPS11Q9H270 941 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 TRABDQ9H4I3 376 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 RWDD3Q9Y3V2 267 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 INSL6Q9Y581 213 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 EVPLQ92817 2033 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 CCDC78A2IDD5 438 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 MSI1O43347 362 aaKnown RBP11.92□□□□□ -0.5
VPS4A-201ENST00000254950 FAM189A1O60320 539 aa11.92□□□□□ -0.5
VPS4A-201ENST00000254950 TSPAN3O60637 253 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms