RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PAN2Q504Q3 1202 aaKnown RBP21.95■■□□□ 1.1
TRIM28-201ENST00000253024 WASHC2DQ5SRD0 308 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 CDKL3Q8IVW4 592 aaPredicted RBP21.95■■□□□ 1.1
TRIM28-201ENST00000253024 SPATA6LQ8N4H0 392 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 DNAAF3Q8N9W5 541 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 P2RY11Q96G91 374 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 ZFP42Q96MM3 310 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 C16orf70Q9BSU1 422 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 FRMD8P1Q9BZ68 369 aaPredicted RBP21.95■■□□□ 1.1
TRIM28-201ENST00000253024 PRDM12Q9H4Q4 367 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 XPNPEP3Q9NQH7 507 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 TMEM216Q9P0N5 145 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 TXNDC16Q9P2K2 825 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 LNPEPQ9UIQ6 1025 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 M0QYT0 321 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 BPGMP07738 259 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 LINGO3P0C6S8 592 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 TYK2P29597 1187 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 HOXA11P31270 313 aaPredicted RBP21.95■■□□□ 1.1
TRIM28-201ENST00000253024 SOX4Q06945 474 aaPredicted RBP21.95■■□□□ 1.1
TRIM28-201ENST00000253024 MARCH8Q5T0T0 291 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 ERO1BQ86YB8 467 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 TFB1MQ8WVM0 346 aaKnown RBP21.95■■□□□ 1.1
TRIM28-201ENST00000253024 ZFATQ9P243 1243 aa21.95■■□□□ 1.1
TRIM28-201ENST00000253024 MEIS3P2A8K0S8 358 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 NDC80O14777 642 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 ARL4AP40617 200 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 OCRLQ01968 901 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 BLMHQ13867 455 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 STILQ15468 1287 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 TCHHL1Q5QJ38 904 aaPredicted RBP21.94■■□□□ 1.1
TRIM28-201ENST00000253024 ATG16L1Q676U5 607 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 IL31Q6EBC2 164 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 TAPT1Q6NXT6 567 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 DPP9Q86TI2 863 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 PIGZQ86VD9 579 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 RASSF3Q86WH2 238 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 GPC2Q8N158 579 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 ACVR1CQ8NER5 493 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 FBXO41Q8TF61 875 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 TMEM40Q8WWA1 233 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 SNX25Q9H3E2 840 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 STOML1Q9UBI4 398 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 BCLAF3A2AJT9 711 aaKnown RBP21.94■■□□□ 1.1
TRIM28-201ENST00000253024 DYNC1LI2O43237 492 aaPredicted RBP21.94■■□□□ 1.1
TRIM28-201ENST00000253024 DNAJC6O75061 913 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP21.94■■□□□ 1.12e-7■■■■■ 70.3
TRIM28-201ENST00000253024 PLD6Q8N2A8 252 aaKnown RBP21.94■■□□□ 1.1
TRIM28-201ENST00000253024 EDEM1Q92611 657 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 PANX3Q96QZ0 392 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 MED10Q9BTT4 135 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 SLC4A5Q9BY07 1137 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 RHOBTB2Q9BYZ6 727 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 RNF181Q9P0P0 153 aa21.94■■□□□ 1.1
TRIM28-201ENST00000253024 DNAJC25-GNG10A0A024R161 153 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 E9PBE3 544 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 KLHL41O60662 606 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 WFS1O76024 890 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 PRKCHP24723 683 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 GLRBP48167 497 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 IRF9Q00978 393 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 ACAP1Q15027 740 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 DNAJB3Q8WWF6 145 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 FETUBQ9UGM5 382 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 SLC7A8Q9UHI5 535 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 SPECC1L-ADORA2AF8WAN1 911 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 SLC25A27O95847 323 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 GJA5P36382 358 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 AVPR1AP37288 418 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 MAP3K7CLP57077 242 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 TEX44Q53QW1 395 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 TMEM110Q86TL2 294 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 LMNTD2Q8IXW0 634 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 RNF169Q8NCN4 708 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 PHC3Q8NDX5 983 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 CELF6Q96J87 481 aaKnown RBP21.93■■□□□ 1.1
TRIM28-201ENST00000253024 KLHL8Q9P2G9 620 aaPredicted RBP21.93■■□□□ 1.1
TRIM28-201ENST00000253024 EMCNQ9ULC0 261 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 PPM1HQ9ULR3 514 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 TRAFD1O14545 582 aaPredicted RBP21.93■■□□□ 1.1
TRIM28-201ENST00000253024 MYCNP04198 464 aaPredicted RBP21.93■■□□□ 1.1
TRIM28-201ENST00000253024 ATP6V1C1P21283 382 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 AFF1P51825 1210 aaKnown RBP21.93■■□□□ 1.1
TRIM28-201ENST00000253024 SCUBE1Q8IWY4 988 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 ULK2Q8IYT8 1036 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 ZNF669Q96BR6 464 aaPredicted RBP21.93■■□□□ 1.1
TRIM28-201ENST00000253024 ZNF670Q9BS34 389 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 LRRC42Q9Y546 428 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 PCDHA11Q9Y5I1 949 aa21.93■■□□□ 1.1
TRIM28-201ENST00000253024 VHLP40337 213 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 SLC1A6P48664 564 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 ZNF484Q5JVG2 852 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 THEMIS2Q5TEJ8 643 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 DPY19L2Q6NUT2 758 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 SLC7A14Q8TBB6 771 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 MFSD3Q96ES6 412 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 DGKIO75912 1065 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 DESP17661 470 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 HSP90AA5PQ58FG0 334 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 C9orf57Q5W0N0 161 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms