RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SDHAF2Q9NX18 166 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ING3Q9NXR8 418 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CYP39A1Q9NYL5 469 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DDX25Q9UHL0 483 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TNPO3Q9Y5L0 923 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TRAV34A0A0B4J273 112 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF879B4DU55 563 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 E7EWF7 191 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DFFAO00273 331 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SPAG6O75602 509 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 MAP3K8P41279 467 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SLC26A2P50443 739 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 GRIN2CQ14957 1233 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PDK1Q15118 436 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TDRD12Q587J7 1177 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PAGE2BQ5JRK9 111 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SLC9A4Q6AI14 798 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 LAYNQ6UX15 382 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TMCO2Q7Z6W1 182 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF619Q8N2I2 560 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 MCPH1Q8NEM0 835 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DENND1AQ8TEH3 1009 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 KAT2BQ92831 832 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 INPP4AQ96PE3 977 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 HIPK3Q9H422 1215 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PIGUQ9H490 435 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 UVRAGQ9P2Y5 699 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 RCOR1Q9UKL0 485 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SAMHD1Q9Y3Z3 626 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 KDM4BO94953 1096 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 DIRAS3O95661 229 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ALBP02768 609 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ABCB1P08183 1280 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SLC7A2P52569 658 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ERVK-25P63136 954 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 JMJD6Q6NYC1 403 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TAF8Q7Z7C8 310 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TTC6Q86TZ1 520 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 AHI1Q8N157 1196 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 FNIP1Q8TF40 1166 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 LRRN4Q8WUT4 740 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ERVK-6Q9BXR3 956 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ERVK-18Q9QC07 812 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SLC22A14Q9Y267 594 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ASCC3Q8N3C0 2202 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 AHCYP23526 432 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CHMLP26374 656 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 PMLP29590 882 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CACNB1Q02641 598 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 GTF2IRD2BQ6EKJ0 949 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TYW1BQ6NUM6 668 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 KRT28Q7Z3Y7 464 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 GTF2IRD2Q86UP8 949 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 IL17RDQ8NFM7 739 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 NEDD4LQ96PU5 975 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CITED2Q99967 270 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 HEPHQ9BQS7 1158 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 H7C0S8 307 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TRIM38O00635 465 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 FCGR1AP12314 374 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 NT5C2P49902 561 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CYP4A11Q02928 519 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 UBAP2LQ14157 1087 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 AARS2Q5JTZ9 985 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ATAD3CQ5T2N8 411 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 MTFR2Q6P444 385 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 LRIG3Q6UXM1 1119 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF765Q7L2R6 523 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ZFP42Q96MM3 310 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SLC5A7Q9GZV3 580 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 POLR3FQ9H1D9 316 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 EPC1Q9H2F5 836 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 FANCEQ9HB96 536 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 NPHS2Q9NP85 383 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 PAQR5Q9NXK6 330 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 GIN1Q9NXP7 522 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ERAP1Q9NZ08 941 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CLPXO76031 633 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CHRNA3P32297 505 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 GNG2P59768 71 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 MAPK11Q15759 364 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CARTPTQ16568 116 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF829Q3KNS6 432 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ZMYM1Q5SVZ6 1142 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 C20orf194Q5TEA3 1177 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 SYDE2Q5VT97 1194 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CSRNP1Q96S65 589 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 PIDD1Q9HB75 910 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 PNMA8BQ9ULN7 279 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 NR2E1Q9Y466 385 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 KCNN4O15554 427 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CALUO43852 315 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TOM1O60784 492 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 GADD45BO75293 160 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 PALMO75781 387 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 CNOT4O95628 575 aaKnown RBP3.66□□□□□ -1.82
SCN1A-221ENST00000641996 TEFQ10587 303 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 ORC1Q13415 861 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 LONRF2Q1L5Z9 754 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 PAPD4Q6PIY7 484 aaKnown RBP3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms