RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ZNF845Q96IR2 970 aaPredicted RBP4.85□□□□□ -1.63
CD44-239ENST00000639002 LYZL4Q96KX0 146 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 TMOD4Q9NZQ9 345 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 ZMYND8Q9ULU4 1186 aaPredicted RBP4.85□□□□□ -1.63
CD44-239ENST00000639002 COG5Q9UP83 839 aa4.85□□□□□ -1.63
CD44-239ENST00000639002 SPATA31A5Q5VU36 1347 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 SPATA31A7Q8IWB4 1347 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 A0A1W2PPC4 97 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 FAM90A8PA6NJQ4 464 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 CCNT2O60583 730 aaKnown RBP4.84□□□□□ -1.63
CD44-239ENST00000639002 FAM90A13PP0C7W8 464 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 FAM90A24PP0C7X0 464 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 STAT6P42226 847 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 SLC12A2P55011 1212 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 SEMA3BQ13214 749 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 ATP1A4Q13733 1029 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 MANEAQ5SRI9 462 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 MRNIPQ6NTE8 343 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 WDR75Q8IWA0 830 aaKnown RBP4.84□□□□□ -1.63
CD44-239ENST00000639002 SENP7Q9BQF6 1050 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 PIMREGQ9BSJ6 248 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 PCDHAC1Q9H158 963 aa4.84□□□□□ -1.63
CD44-239ENST00000639002 TMEM272A0A1B0GTI8 110 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 GTPBP1O00178 669 aaKnown RBP4.83□□□□□ -1.64
CD44-239ENST00000639002 ZSCAN9O15535 394 aaPredicted RBP4.83□□□□□ -1.64
CD44-239ENST00000639002 UGDHO60701 494 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 NDST3O95803 873 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 PECAM1P16284 738 aaPredicted RBP4.83□□□□□ -1.64
CD44-239ENST00000639002 TFEBP19484 476 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 MATN1P21941 496 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 IL6STP40189 918 aaPredicted RBP4.83□□□□□ -1.64
CD44-239ENST00000639002 PRIM2P49643 509 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 DMWDQ09019 674 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.83□□□□□ -1.64
CD44-239ENST00000639002 UBAP2Q5T6F2 1119 aaKnown RBP4.83□□□□□ -1.64
CD44-239ENST00000639002 ASPHD1Q5U4P2 390 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 CCDC144NLQ6NUI1 221 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 TLDC1Q6P9B6 456 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 C16orf89Q6UX73 402 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 RHPN2Q8IUC4 686 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 LAS2Q8IYD9 372 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 SLC44A5Q8NCS7 719 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 ACRBPQ8NEB7 543 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 OR52L2PQ8NGH6 319 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 B4GALNT2Q8NHY0 566 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 ASB12Q8WXK4 309 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 OVCA2Q8WZ82 227 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 TUBB6Q9BUF5 446 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 ELOVL1Q9BW60 279 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 TTLL2Q9BWV7 592 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 MAGEB5Q9BZ81 275 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 CDCP1Q9H5V8 836 aa4.83□□□□□ -1.64
CD44-239ENST00000639002 PAPOLBQ9NRJ5 636 aaKnown RBP4.83□□□□□ -1.64
CD44-239ENST00000639002 AGO2Q9UKV8 859 aaKnown RBP4.83□□□□□ -1.64
CD44-239ENST00000639002 TRIP12Q14669 1992 aaPredicted RBP4.82□□□□□ -1.64
CD44-239ENST00000639002 TTC34A8MYJ7 566 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 F8W810 466 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 CTIFO43310 598 aaKnown RBP4.82□□□□□ -1.64
CD44-239ENST00000639002 WNT1P04628 370 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 ENO1P06733 434 aaKnown RBP4.82□□□□□ -1.64
CD44-239ENST00000639002 MYL4P12829 197 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 MMP8P22894 467 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 PGM5Q15124 567 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 SLC5A9Q2M3M2 681 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 ARHGAP15Q53QZ3 475 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 DAB2IPQ5VWQ8 1189 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 NUGGCQ68CJ6 796 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 KIAA1161Q6NSJ0 714 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 USP17L6PQ6QN14 398 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 ZNF474Q6S9Z5 364 aaPredicted RBP4.82□□□□□ -1.64
CD44-239ENST00000639002 FMNL3Q8IVF7 1028 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 UEVLDQ8IX04 471 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 ADGRF4Q8IZF3 695 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 GLIS1Q8NBF1 620 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 GLMPQ8WWB7 406 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 ASB5Q8WWX0 329 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 TTC17Q96AE7 1141 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 NLRP4Q96MN2 994 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 COLEC11Q9BWP8 271 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 HIPK2Q9H2X6 1198 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 THSD1Q9NS62 852 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 KLHL42Q9P2K6 505 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 MAN2B2Q9Y2E5 1009 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 EVPLQ92817 2033 aa4.82□□□□□ -1.64
CD44-239ENST00000639002 NOTCH4Q99466 2003 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 KIR2DS5A0A0G2JLQ3 304 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 KIR2DS3K7RE56 304 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 USP12O75317 370 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 RFPL3SP0C7P2 107 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 CBSLP0DN79 551 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 HOXB2P14652 356 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 EGR1P18146 543 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 CBSP35520 551 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 STT3AP46977 705 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 SEMA3AQ14563 771 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 SMTNL2Q2TAL5 461 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 RFX8Q6ZV50 586 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 BEND5Q7L4P6 421 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 CCDC33Q8N5R6 958 aa4.81□□□□□ -1.64
CD44-239ENST00000639002 SNX27Q96L92 541 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms