RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 UCMAQ8WVF2 138 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 MED8Q96G25 268 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 CPNE5Q9HCH3 593 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 HSPBP1Q9NZL4 362 aa17.18■□□□□ 0.34
CLN3-264ENST00000637985 LSM7Q9UK45 103 aaKnown RBP17.18■□□□□ 0.34
CLN3-264ENST00000637985 UBR5O95071 2799 aaPredicted RBP17.18■□□□□ 0.34
CLN3-264ENST00000637985 VILLO15195 856 aa17.17■□□□□ 0.34
CLN3-264ENST00000637985 SEMA4FO95754 770 aa17.17■□□□□ 0.34
CLN3-264ENST00000637985 PENKP01210 267 aaPredicted RBP17.17■□□□□ 0.34
CLN3-264ENST00000637985 ILKQ13418 452 aa17.17■□□□□ 0.34
CLN3-264ENST00000637985 SHBQ15464 509 aa17.17■□□□□ 0.34
CLN3-264ENST00000637985 PRAMEF14Q5SWL7 426 aa17.17■□□□□ 0.34
CLN3-264ENST00000637985 Q6ZNB5 142 aa17.17■□□□□ 0.34
CLN3-264ENST00000637985 ADAT2Q7Z6V5 191 aaKnown RBP17.17■□□□□ 0.34
CLN3-264ENST00000637985 CEP57L1Q8IYX8 460 aa17.17■□□□□ 0.34
CLN3-264ENST00000637985 B3GALNT2Q8NCR0 500 aa17.17■□□□□ 0.34
CLN3-264ENST00000637985 OR2T3Q8NH03 318 aa17.17■□□□□ 0.34
CLN3-264ENST00000637985 SNRNP27Q8WVK2 155 aaKnown RBP17.17■□□□□ 0.34
CLN3-264ENST00000637985 RFFLQ8WZ73 363 aa17.17■□□□□ 0.34
CLN3-264ENST00000637985 ELF4Q99607 663 aaPredicted RBP17.17■□□□□ 0.34
CLN3-264ENST00000637985 CGNQ9P2M7 1197 aaKnown RBP17.17■□□□□ 0.34
CLN3-264ENST00000637985 ARID1BQ8NFD5 2236 aaPredicted RBP17.16■□□□□ 0.34
CLN3-264ENST00000637985 TGFB1I1O43294 461 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 TNNC2P02585 160 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 ITGAVP06756 1048 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 EPHX1P07099 455 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 SLFN14P0C7P3 912 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 GLDCP23378 1020 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 GOLGA8FQ08AF8 430 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 GOLGA8DPQ0D2H9 430 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 E2F5Q15329 346 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 DUOXA2Q1HG44 320 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 BROXQ5VW32 411 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 CBWD2Q8IUF1 395 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 EID2Q8N6I1 236 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 DCBLD1Q8N8Z6 715 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 PIWIL1Q96J94 861 aaKnown RBP17.16■□□□□ 0.34
CLN3-264ENST00000637985 HIC2Q96JB3 615 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 ACE2Q9BYF1 805 aaPredicted RBP17.16■□□□□ 0.34
CLN3-264ENST00000637985 LHX5Q9H2C1 402 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 BLZF1Q9H2G9 400 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 CYLDQ9NQC7 956 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 AGPAT3Q9NRZ7 376 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 ELOVL2Q9NXB9 296 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 CLCA2Q9UQC9 943 aa17.16■□□□□ 0.34
CLN3-264ENST00000637985 USP9XQ93008 2570 aaPredicted RBP17.15■□□□□ 0.34
CLN3-264ENST00000637985 TEX15Q9BXT5 2789 aa17.15■□□□□ 0.34
CLN3-264ENST00000637985 FSBPO95073 299 aa17.15■□□□□ 0.34
CLN3-264ENST00000637985 ATP5C1P36542 298 aaKnown RBP17.15■□□□□ 0.34
CLN3-264ENST00000637985 AFMP43652 599 aa17.15■□□□□ 0.34
CLN3-264ENST00000637985 BCAT1P54687 386 aa17.15■□□□□ 0.34
CLN3-264ENST00000637985 C21orf59P57076 290 aa17.15■□□□□ 0.34
CLN3-264ENST00000637985 PCBP4P57723 403 aaKnown RBP17.15■□□□□ 0.34
CLN3-264ENST00000637985 RACK1P63244 317 aaKnown RBP17.15■□□□□ 0.34
CLN3-264ENST00000637985 CAMK2GQ13555 558 aaPredicted RBP17.15■□□□□ 0.34
CLN3-264ENST00000637985 CUL4BQ13620 913 aa17.15■□□□□ 0.34
CLN3-264ENST00000637985 BMT2Q1RMZ1 405 aa17.15■□□□□ 0.34
CLN3-264ENST00000637985 FYB2Q5VWT5 728 aa17.15■□□□□ 0.34
CLN3-264ENST00000637985 PAQR9Q6ZVX9 377 aa17.15■□□□□ 0.34
CLN3-264ENST00000637985 WDR49Q8IV35 697 aa17.15■□□□□ 0.34
CLN3-264ENST00000637985 NAF1Q96HR8 494 aaKnown RBP17.15■□□□□ 0.34
CLN3-264ENST00000637985 BTBD1Q9H0C5 482 aa17.15■□□□□ 0.34
CLN3-264ENST00000637985 DMAP1Q9NPF5 467 aaPredicted RBP17.15■□□□□ 0.34
CLN3-264ENST00000637985 USP25Q9UHP3 1055 aa17.15■□□□□ 0.34
CLN3-264ENST00000637985 A8MXQ7 604 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 CST3P01034 146 aaPredicted RBP17.14■□□□□ 0.33
CLN3-264ENST00000637985 ABCB4P21439 1286 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 CMA1P23946 247 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 CASP1P29466 404 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 KRT85P78386 507 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 EIF4HQ15056 248 aaKnown RBP17.14■□□□□ 0.33
CLN3-264ENST00000637985 SNRNP35Q16560 246 aaKnown RBP17.14■□□□□ 0.33
CLN3-264ENST00000637985 SERPINA13PQ6UXR4 307 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 FAM35AQ86V20 835 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 C12orf56Q8IXR9 622 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 XXYLT1Q8NBI6 393 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 SORCS1Q8WY21 1168 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 ZNF578Q96N58 590 aaPredicted RBP17.14■□□□□ 0.33
CLN3-264ENST00000637985 SLC39A2Q9NP94 309 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 TLR8Q9NR97 1041 aaKnown RBP17.14■□□□□ 0.33
CLN3-264ENST00000637985 IL17BQ9UHF5 180 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 SERTAD1Q9UHV2 236 aa17.14■□□□□ 0.33
CLN3-264ENST00000637985 DOPEY2Q9Y3R5 2298 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 NTRK1P04629 796 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 MYL1P05976 194 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 IGHV4-34P06331 123 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 INSM1Q01101 510 aaPredicted RBP17.13■□□□□ 0.33
CLN3-264ENST00000637985 PSMD6Q15008 389 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 KNOP1Q1ED39 458 aaKnown RBP17.13■□□□□ 0.33
CLN3-264ENST00000637985 COLEC12Q5KU26 742 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 TMEM215Q68D42 235 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 KLHDC10Q6PID8 442 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 TRAPPC11Q7Z392 1133 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 ANKS1BQ7Z6G8 1248 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 DHX40Q8IX18 779 aaKnown RBP17.13■□□□□ 0.33
CLN3-264ENST00000637985 NELFCDQ8IXH7 590 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 RDH13Q8NBN7 331 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 ZMIZ2Q8NF64 920 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 PAGE5Q96GU1 130 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 SPATA32Q96LK8 384 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms