RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 EGFL7Q9UHF1 273 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 STK24Q9Y6E0 443 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 YTHDC2Q9H6S0 1430 aaKnown RBP5.16□□□□□ -1.58
VPS13D-214ENST00000620676 LOC110117498-PIK3R3F6TDL0 507 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 OR7A10O76100 309 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ZNF12P17014 697 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 FMO3P31513 532 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 RPL6Q02878 288 aaKnown RBP5.16□□□□□ -1.58
VPS13D-214ENST00000620676 SPDYCQ5MJ68 293 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 PDZD4Q76G19 769 aaPredicted RBP5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ALG3Q92685 438 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 DCAF5Q96JK2 942 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 IKZF4Q9H2S9 585 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ALG2Q9H553 416 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 PVALEFA0A1B0GWK0 134 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 MATN2O00339 956 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CIAO1O76071 339 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 VEGFAP15692 232 aaPredicted RBP5.16□□□□□ -1.58
VPS13D-214ENST00000620676 TGM2P21980 687 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CCND2P30279 289 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 BTDP43251 543 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 SEZ6Q53EL9 994 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 DUPD1Q68J44 220 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 MAGEE1Q9HCI5 957 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 DNMBPQ6XZF7 1577 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CYB561D2O14569 222 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ABLIM1O14639 778 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ALADP13716 330 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ACOT2P49753 483 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 SOX10P56693 466 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 COX10Q12887 443 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 LRP8Q14114 963 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 SYCE2Q6PIF2 218 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CNPPD1Q9BV87 410 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 GLT8D2Q9H1C3 349 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 KCNK4Q9NYG8 393 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 A6NHS1 94 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 MTSS1O43312 755 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 TBX1O43435 398 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 KCNA5P22460 613 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CACNB3P54284 484 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 BCAT1P54687 386 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 LRRC74AQ0VAA2 488 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 GLRA4Q5JXX5 417 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 UNC45BQ8IWX7 931 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 PRELID2Q8N945 189 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 VCPIP1Q96JH7 1222 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ERGIC2Q96RQ1 377 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 LIMD1Q9UGP4 676 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 FBXO40Q9UH90 709 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ZFYVE9O95405 1425 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 WDR62O43379 1518 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CCNB1P14635 433 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 LSAMPQ13449 338 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 TBCCQ15814 346 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 TUBA3EQ6PEY2 450 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ARPC5LQ9BPX5 153 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 DNAJC18Q9H819 358 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 SNTG2Q9NY99 539 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 WDR17Q8IZU2 1322 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CLPXO76031 633 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CLIC3O95833 236 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 MMRN1Q13201 1228 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 WDR72Q3MJ13 1102 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 C4orf22Q6V702 233 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 SMIM5Q71RC9 77 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 SOX17Q9H6I2 414 aaPredicted RBP5.16□□□□□ -1.58
VPS13D-214ENST00000620676 THAP1Q9NVV9 213 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 DNPEPQ9ULA0 475 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CYP4F8P98187 520 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 IPMKQ8NFU5 416 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 AKAP1Q92667 903 aaKnown RBP eCLIP5.16□□□□□ -1.58
VPS13D-214ENST00000620676 VTI1AQ96AJ9 217 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 TP63Q9H3D4 680 aaPredicted RBP5.16□□□□□ -1.58
VPS13D-214ENST00000620676 DENND3A2RUS2 1198 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 STX16-NPEPL1H3BU86 382 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ADSSP30520 456 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 PAOXQ6QHF9 649 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 PDSS2Q86YH6 399 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 C10orf107Q8IVU9 208 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 MCFD2Q8NI22 146 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 FBXO27Q8NI29 283 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 NLRP4Q96MN2 994 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CDH1P12830 882 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ITGA3P26006 1051 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CACNB2Q08289 660 aaPredicted RBP5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ERICH5Q6P6B1 374 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 C6orf89Q6UWU4 347 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 NPNTQ6UXI9 565 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 THNSL1Q8IYQ7 743 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CEP170P1Q96L14 293 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 C8orf4Q9NR00 106 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 GPRC5DQ9NZD1 345 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 MED14O60244 1454 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 DDX3YO15523 660 aaKnown RBP5.16□□□□□ -1.58
VPS13D-214ENST00000620676 CLASP2O75122 1294 aaKnown RBP5.16□□□□□ -1.58
VPS13D-214ENST00000620676 PCCAP05165 728 aaPredicted RBP5.16□□□□□ -1.58
VPS13D-214ENST00000620676 FMO4P31512 558 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ARL4AP40617 200 aa5.16□□□□□ -1.58
VPS13D-214ENST00000620676 ABCE1P61221 599 aaKnown RBP5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms