RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CAPNS1P04632 268 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 CALB1P05937 261 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 SERPINB9P50453 376 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 GDF10P55107 478 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 PFKPQ01813 784 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 ZNF423Q2M1K9 1284 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 C16orf89Q6UX73 402 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 BBS12Q6ZW61 710 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 ZSWIM2Q8NEG5 633 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 USP6NLQ92738 828 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 TCHPQ9BT92 498 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 NYAP2Q9P242 653 aa11.15□□□□□ -0.63
UPF3A-212ENST00000619079 FAM155AB1AL88 458 aaPredicted RBP11.14□□□□□ -0.63
UPF3A-212ENST00000619079 FBP2O00757 339 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 TOM1L1O75674 476 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 SORBS2O94875 1100 aaKnown RBP11.14□□□□□ -0.63
UPF3A-212ENST00000619079 H6PDO95479 791 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 PRKCHP24723 683 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 GRK2P25098 689 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 HOXA13P31271 388 aaPredicted RBP11.14□□□□□ -0.63
UPF3A-212ENST00000619079 ENTPD1P49961 510 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 ESRRGP62508 458 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 TRPC3Q13507 836 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 FLOT2Q14254 428 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 C6orf52Q5T4I8 152 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 TMEM53Q6P2H8 277 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 FRMD7Q6ZUT3 714 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 IGDCC3Q8IVU1 814 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 NDUFAF2Q8N183 169 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 NIPA2Q8N8Q9 360 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 HM13Q8TCT9 377 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 ZNF577Q9BSK1 485 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 C20orf27Q9GZN8 174 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 UNC45AQ9H3U1 944 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 VPS28Q9UK41 221 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 GREB1LQ9C091 1923 aaPredicted RBP11.14□□□□□ -0.63
UPF3A-212ENST00000619079 TCRBV7S3A2A0A539 114 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 MANSC4A6NHS7 340 aaPredicted RBP11.14□□□□□ -0.63
UPF3A-212ENST00000619079 C19orf81C9J6K1 198 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 CYB561D2O14569 222 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 CHADO15335 359 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 BAIAP3O94812 1187 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 C8BP07358 591 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 COX4I1P13073 169 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 CCDC130P13994 396 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 CNTFP26441 200 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 GNA15P30679 374 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 GABRB2P47870 512 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 SLC1A6P48664 564 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 TXNL4AP83876 142 aaKnown RBP11.14□□□□□ -0.63
UPF3A-212ENST00000619079 CYP24A1Q07973 514 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 SREBF2Q12772 1141 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 ZNF829Q3KNS6 432 aaPredicted RBP11.14□□□□□ -0.63
UPF3A-212ENST00000619079 DNAJC24Q6P3W2 148 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 DCUN1D2Q6PH85 259 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 FASTKD5Q7L8L6 764 aaKnown RBP11.14□□□□□ -0.63
UPF3A-212ENST00000619079 TMEM110Q86TL2 294 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 SLC15A3Q8IY34 581 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 THNSL1Q8IYQ7 743 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 DDHD1Q8NEL9 900 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 TFB1MQ8WVM0 346 aaKnown RBP11.14□□□□□ -0.63
UPF3A-212ENST00000619079 FBXL18Q96ME1 805 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 PHF12Q96QT6 1004 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 EIF2AQ9BY44 585 aaKnown RBP11.14□□□□□ -0.63
UPF3A-212ENST00000619079 CCDC68Q9H2F9 335 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 PALMDQ9NP74 551 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 KCNH4Q9UQ05 1017 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 MYRFQ9Y2G1 1151 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 COQ6Q9Y2Z9 468 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 TMX2Q9Y320 296 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 TTLL3Q9Y4R7 772 aa11.14□□□□□ -0.63
UPF3A-212ENST00000619079 A0A0G2JLL6 359 aaPredicted RBP11.13□□□□□ -0.63
UPF3A-212ENST00000619079 MCF2LO15068 1137 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 CALCAP01258 141 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 SERPINE1P05121 402 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 KRT7P08729 469 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 OCM2P0CE71 109 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 OCMP0CE72 109 aaPredicted RBP11.13□□□□□ -0.63
UPF3A-212ENST00000619079 TCF4P15884 667 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 FUT4P22083 530 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 MMP8P22894 467 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 IDH3AP50213 366 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 DPYSQ14117 519 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 DPYSL3Q14195 570 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 CEP55Q53EZ4 464 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 FASTKD1Q53R41 847 aaKnown RBP11.13□□□□□ -0.63
UPF3A-212ENST00000619079 BRDTQ58F21 947 aaPredicted RBP11.13□□□□□ -0.63
UPF3A-212ENST00000619079 METTL21CQ5VZV1 264 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 MBLAC2Q68D91 279 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 PRRT2Q7Z6L0 340 aaPredicted RBP11.13□□□□□ -0.63
UPF3A-212ENST00000619079 SIAH1Q8IUQ4 282 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 CHERPQ8IWX8 916 aaKnown RBP11.13□□□□□ -0.63
UPF3A-212ENST00000619079 LZTR1Q8N653 840 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 ZIC5Q96T25 663 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 RIT2Q99578 217 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 OSBPL11Q9BXB4 747 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 GCOM2Q9BZD3 368 aaPredicted RBP11.13□□□□□ -0.63
UPF3A-212ENST00000619079 TOPORSQ9NS56 1045 aaPredicted RBP11.13□□□□□ -0.63
UPF3A-212ENST00000619079 PCDHGB4Q9UN71 923 aa11.13□□□□□ -0.63
UPF3A-212ENST00000619079 PCDHGB5Q9Y5G0 923 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms