RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 PCDHB7Q9Y5E2 793 aa17.93■□□□□ 0.46
PCDHGC3-205ENST00000617641 SNX10Q9Y5X0 201 aa17.93■□□□□ 0.46
PCDHGC3-205ENST00000617641 DCLK1O15075 740 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 TRAPPC3O43617 180 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 OAZ2O95190 189 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 APRTP07741 180 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 ELK3P41970 407 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 SEMA3BQ13214 749 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 C3orf62Q6ZUJ4 267 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 SCN4BQ8IWT1 228 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 TP53INP2Q8IXH6 220 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 SCML4Q8N228 414 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 DQX1Q8TE96 717 aaKnown RBP17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 ATXN2LQ8WWM7 1075 aaKnown RBP17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 XPO6Q96QU8 1125 aaKnown RBP17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 FAM107BQ9H098 131 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 ZCWPW1Q9H0M4 648 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 WDCPQ9H6R7 721 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 PRDM16Q9HAZ2 1276 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 COL4A4P53420 1690 aaPredicted RBP17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 C5orf60A6NFR6 353 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 HACD1B0YJ81 288 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 TNFRSF10BO14763 440 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 PQBP1O60828 265 aaKnown RBP17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 F9P00740 461 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 CXCR3P49682 368 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 PGFP49763 221 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 EFTUD2Q15029 972 aaKnown RBP eCLIP17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 VSTM1Q6UX27 236 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 PPP1R21Q6ZMI0 780 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 PALM2Q8IXS6 379 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 AGGF1Q8N302 714 aaeCLIP17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 STKLD1Q8NE28 680 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 TET1Q8NFU7 2136 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 HTR3CQ8WXA8 447 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 MAML1Q92585 1016 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 CENPTQ96BT3 561 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 CCT8L2Q96SF2 557 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 TKTL2Q9H0I9 626 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 RSPH14Q9UHP6 348 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 RABGEF1Q9UJ41 708 aa17.92■□□□□ 0.46
PCDHGC3-205ENST00000617641 GMNCA6NCL1 334 aa17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 SRRM3A6NNA2 597 aaPredicted RBP17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 PIAS1O75925 651 aa17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 COL6A1P12109 1028 aa17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 TPI1P60174 286 aa17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 PAFAH1B3Q15102 231 aaKnown RBP17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 ARL13BQ3SXY8 428 aa17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 VARS2Q5ST30 1063 aaKnown RBP17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 BZW1Q7L1Q6 419 aaKnown RBP17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 CEP57Q86XR8 500 aa17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 SRRM1Q8IYB3 904 aaKnown RBP17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 VPS52Q8N1B4 723 aa17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 RIBC1Q8N443 379 aaPredicted RBP17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 CASD1Q96PB1 797 aa17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 ELAC1Q9H777 363 aaKnown RBP17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 INTS9Q9NV88 658 aaKnown RBP17.91■□□□□ 0.46
PCDHGC3-205ENST00000617641 TMEM120BA0PK00 339 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 F5H423 210 aaPredicted RBP17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 ERCC2P18074 760 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 PHBP35232 272 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 MAGEA6P43360 314 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 YWHAGP61981 247 aaKnown RBP eCLIP17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 AP1B1Q10567 949 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 PRKD1Q15139 912 aaPredicted RBP17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 SDHAF4Q5VUM1 108 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 ARHGEF18Q6ZSZ5 1173 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 TDRPQ86YL5 185 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 FBF1Q8TES7 1133 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 ZNF473Q8WTR7 871 aaKnown RBP17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 SEPT8Q92599 483 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 B3GALT6Q96L58 329 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 SAGE1Q9NXZ1 904 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 TEX264Q9Y6I9 313 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 SF3B1O75533 1304 aaKnown RBP eCLIP17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 VWA8A3KMH1 1905 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 BRAFP15056 766 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 ANKRD20A2Q5SQ80 823 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 ANKRD20A1Q5TYW2 823 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 ANKRD20A3Q5VUR7 823 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 C4orf22Q6V702 233 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 DENND5BQ6ZUT9 1274 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 TADA2BQ86TJ2 420 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 CAND1Q86VP6 1230 aaKnown RBP17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 DCP1BQ8IZD4 617 aaKnown RBP17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 CCNYQ8ND76 341 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 RNF34Q969K3 372 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 SCLYQ96I15 445 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 PRDM12Q9H4Q4 367 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 KCNK9Q9NPC2 374 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 PAK6Q9NQU5 681 aaPredicted RBP17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 ADAM28Q9UKQ2 775 aa17.9■□□□□ 0.46
PCDHGC3-205ENST00000617641 PITPNM1O00562 1244 aa17.89■□□□□ 0.46
PCDHGC3-205ENST00000617641 GPR15P49685 360 aa17.89■□□□□ 0.46
PCDHGC3-205ENST00000617641 ATN1P54259 1190 aaPredicted RBP17.89■□□□□ 0.46
PCDHGC3-205ENST00000617641 PDK1Q15118 436 aa17.89■□□□□ 0.46
PCDHGC3-205ENST00000617641 FAM171A1Q5VUB5 890 aa17.89■□□□□ 0.46
PCDHGC3-205ENST00000617641 MGARPQ8TDB4 240 aa17.89■□□□□ 0.46
PCDHGC3-205ENST00000617641 P2RY11Q96G91 374 aa17.89■□□□□ 0.46
PCDHGC3-205ENST00000617641 PGLYRP2Q96PD5 576 aa17.89■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms