RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CXCL9Q07325 125 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 ABHD15Q6UXT9 468 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 XYLT1Q86Y38 959 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 MPP5Q8N3R9 675 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 TDRD5Q8NAT2 981 aaKnown RBP12.96□□□□□ -0.33
LIG1-221ENST00000613670 SKA1Q96BD8 255 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 LGMNQ99538 433 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 MRPL1Q9BYD6 325 aaKnown RBP12.96□□□□□ -0.33
LIG1-221ENST00000613670 B3GNT5Q9BYG0 378 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 DMAP1Q9NPF5 467 aaPredicted RBP12.96□□□□□ -0.33
LIG1-221ENST00000613670 AURKCQ9UQB9 309 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 SRCAPQ6ZRS2 3230 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 RNF103-CHMP3A0A140T963 221 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 TTLL13PA6NNM8 815 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 VCLP18206 1134 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 TGM2P21980 687 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 NRF1Q16656 503 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 JADE1Q6IE81 842 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 BNC2Q6ZN30 1099 aaPredicted RBP12.96□□□□□ -0.33
LIG1-221ENST00000613670 JADE3Q92613 823 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 HDAC11Q96DB2 347 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 DTNBP1Q96EV8 351 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 PTCD3Q96EY7 689 aaKnown RBP12.96□□□□□ -0.33
LIG1-221ENST00000613670 C7orf26Q96N11 449 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 EFHD1Q9BUP0 239 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 MID2Q9UJV3 735 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 CNTNAP2Q9UHC6 1331 aa12.96□□□□□ -0.33
LIG1-221ENST00000613670 COL14A1Q05707 1796 aaKnown RBP12.96□□□□□ -0.33
LIG1-221ENST00000613670 F8W8V4 182 aa12.96□□□□□ -0.34
LIG1-221ENST00000613670 TRAFD1O14545 582 aaPredicted RBP12.96□□□□□ -0.34
LIG1-221ENST00000613670 PGK2P07205 417 aa12.96□□□□□ -0.34
LIG1-221ENST00000613670 TFE3P19532 575 aaPredicted RBP12.96□□□□□ -0.34
LIG1-221ENST00000613670 ALDH1A3P47895 512 aa12.96□□□□□ -0.34
LIG1-221ENST00000613670 FOLH1Q04609 750 aa12.96□□□□□ -0.34
LIG1-221ENST00000613670 CNPY1Q3B7I2 92 aa12.96□□□□□ -0.34
LIG1-221ENST00000613670 B3GNT9Q6UX72 402 aa12.96□□□□□ -0.34
LIG1-221ENST00000613670 CATSPER4Q7RTX7 472 aa12.96□□□□□ -0.34
LIG1-221ENST00000613670 WDR55Q9H6Y2 383 aaPredicted RBP12.96□□□□□ -0.34
LIG1-221ENST00000613670 IL1RL2Q9HB29 575 aa12.96□□□□□ -0.34
LIG1-221ENST00000613670 GGA3Q9NZ52 723 aa12.96□□□□□ -0.34
LIG1-221ENST00000613670 HMGXB4Q9UGU5 601 aa12.96□□□□□ -0.34
LIG1-221ENST00000613670 CSADQ9Y600 493 aa12.96□□□□□ -0.34
LIG1-221ENST00000613670 ITM2AO43736 263 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 SIN3BO75182 1162 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 RPS6KA3P51812 740 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 WASHC5Q12768 1159 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 Q3C1V9 767 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 SCARA3Q6AZY7 606 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 MTHFD1LQ6UB35 978 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 C16orf89Q6UX73 402 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 KYAT3Q6YP21 454 aaKnown RBP12.95□□□□□ -0.34
LIG1-221ENST00000613670 SEMA6AQ9H2E6 1030 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 ZNF358Q9NW07 568 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 FARP1Q9Y4F1 1045 aaPredicted RBP12.95□□□□□ -0.34
LIG1-221ENST00000613670 A0A096LPK6 155 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 TXNP10599 105 aaKnown RBP12.95□□□□□ -0.34
LIG1-221ENST00000613670 THRAP10827 490 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 EEF1B2P24534 225 aaKnown RBP12.95□□□□□ -0.34
LIG1-221ENST00000613670 CHN2P52757 468 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 HDAC4P56524 1084 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 TNFAIP2Q03169 654 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 RBM44Q6ZP01 1051 aaKnown RBP12.95□□□□□ -0.34
LIG1-221ENST00000613670 SATL1Q86VE3 508 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 MICALL2Q8IY33 904 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 TMEM130Q8N3G9 435 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 ADAM32Q8TC27 787 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 EZH1Q92800 747 aaPredicted RBP12.95□□□□□ -0.34
LIG1-221ENST00000613670 DNAJC1Q96KC8 554 aaKnown RBP12.95□□□□□ -0.34
LIG1-221ENST00000613670 SIK2Q9H0K1 926 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 DDX60LQ5H9U9 1706 aaKnown RBP12.95□□□□□ -0.34
LIG1-221ENST00000613670 FGFR3P22607 806 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 EPHA3P29320 983 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 STX1BP61266 288 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 FKBP1AP62942 108 aaKnown RBP12.95□□□□□ -0.34
LIG1-221ENST00000613670 ACAP1Q15027 740 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 SLC5A9Q2M3M2 681 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 KIF19Q2TAC6 998 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 FAM83AQ86UY5 434 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 HTR3CQ8WXA8 447 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 KRT82Q9NSB4 513 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 DPP3Q9NY33 737 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 SNX13Q9Y5W8 968 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 LAMB1P07942 1786 aa12.95□□□□□ -0.34
LIG1-221ENST00000613670 A0A087WZ62 844 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 RTN3O95197 1032 aaPredicted RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 VTNP04004 478 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 COX4I1P13073 169 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 UQCRBP14927 111 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 VAV1P15498 845 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 UBA1P22314 1058 aaKnown RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 GMPRP36959 345 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 CDK7P50613 346 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 ABCE1P61221 599 aaKnown RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 CYLC2Q14093 348 aaPredicted RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 RAB6CQ53S08 254 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 KYQ8NBH2 561 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 ACO2Q99798 780 aaKnown RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 FDXACB1Q9BRP7 624 aaPredicted RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 RAB6CQ9H0N0 254 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 UPF3AQ9H1J1 476 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms