RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PNPLA1Q8N8W4 532 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 OR2T3Q8NH03 318 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 BAHD1Q8TBE0 780 aaPredicted RBP6.6□□□□□ -1.35
CUX1-220ENST00000607092 BAP1Q92560 729 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 IGSF8Q969P0 613 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 PLD4Q96BZ4 506 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 CYFIP2Q96F07 1278 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 ACOX2Q99424 681 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 SMOQ99835 787 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 BACH2Q9BYV9 841 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 CIPCQ9C0C6 399 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 BTBD1Q9H0C5 482 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 LHX5Q9H2C1 402 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 SMYD3Q9H7B4 428 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 ZDHHC4Q9NPG8 344 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 TMEM30AQ9NV96 361 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 FTSJ1Q9UET6 329 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 SUN2Q9UH99 717 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 TENM4Q6N022 2769 aa6.6□□□□□ -1.35
CUX1-220ENST00000607092 PIEZO2Q9H5I5 2752 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 TYW5A2RUC4 315 aaKnown RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 LRRIQ3A6PVS8 624 aaPredicted RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 CAPN9O14815 690 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 CLIC2O15247 247 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 CALUO43852 315 aaPredicted RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 STX10O60499 249 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 MAGEC1O60732 1142 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 STC2O76061 302 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 DKK1O94907 266 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 TBX18O95935 607 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 C4BPAP04003 597 aaKnown RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 KRT13P13646 458 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 CCDC130P13994 396 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 HOXB3P14651 431 aaPredicted RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 RPL13P26373 211 aaKnown RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 CD27P26842 260 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 HOXD13P35453 343 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 PIK3CAP42336 1068 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 IL12RB1P42701 662 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 ARRB1P49407 418 aaPredicted RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 ST8SIA6P61647 398 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 RACK1P63244 317 aaKnown RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 ILKQ13418 452 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 CAMK2GQ13555 558 aaPredicted RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 SMAD1Q15797 465 aaKnown RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 C8orf34Q49A92 452 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 SLC45A4Q5BKX6 768 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 MPP7Q5T2T1 576 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 FYB2Q5VWT5 728 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 C19orf48Q6RUI8 117 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 CLEC20AQ6ZU45 233 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 USP30Q70CQ3 517 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 NELFCDQ8IXH7 590 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 AHI1Q8N157 1196 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 LINC00301Q8NCQ3 95 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 OR2I1PQ8NGU4 316 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 DDI1Q8WTU0 396 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 RNF139Q8WU17 664 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 ZNF516Q92618 1163 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 DHX58Q96C10 678 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 CCDC34Q96HJ3 373 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 FAM84AQ96KN4 292 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 CAMK1GQ96NX5 476 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 USP28Q96RU2 1077 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 DDX50Q9BQ39 737 aaKnown RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 DUSP16Q9BY84 665 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 ACE2Q9BYF1 805 aaPredicted RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 FGFBP2Q9BYJ0 223 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 NIF3L1Q9GZT8 377 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 MKRN2Q9H000 416 aaKnown RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 FSCN3Q9NQT6 498 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 FAM49BQ9NUQ9 324 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 EXOC1Q9NV70 894 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 USP25Q9UHP3 1055 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 EIF2B4Q9UI10 523 aaKnown RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 RASAL2Q9UJF2 1139 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 HCN2Q9UL51 889 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 RAXQ9Y2V3 346 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 HBS1LQ9Y450 684 aaKnown RBP6.59□□□□□ -1.35
CUX1-220ENST00000607092 NME7Q9Y5B8 376 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 PCDHGA4Q9Y5G9 962 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 RAD54BQ9Y620 910 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 USP3Q9Y6I4 520 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 MYOFQ9NZM1 2061 aa6.59□□□□□ -1.35
CUX1-220ENST00000607092 LRRK2Q5S007 2527 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 A0A1W2PQH9 124 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 ANTXRLA6NF34 631 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 TRABD2BA6NFA1 517 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 LRRC72A6NJI9 287 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 TRIM24O15164 1050 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 CYP26A1O43174 497 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 IRAK2O43187 625 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 SEMA4FO95754 770 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 ASLP04424 464 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 DLDP09622 509 aaKnown RBP6.58□□□□□ -1.36
CUX1-220ENST00000607092 ABCB4P21439 1286 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 MAOBP27338 520 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 ADORA2BP29275 332 aa6.58□□□□□ -1.36
CUX1-220ENST00000607092 CORO1AP31146 461 aaKnown RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms