RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SMG9Q9H0W8 520 aaKnown RBP14.9□□□□□ -0.02
UPF1-211ENST00000600868 OBP2AQ9NY56 170 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 EPS15L1Q9UBC2 864 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 PCSK1NQ9UHG2 260 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 SLC12A6Q9UHW9 1150 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 FAM50BQ9Y247 325 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 CCL26Q9Y258 94 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 HYOU1Q9Y4L1 999 aa14.9□□□□□ -0.02
UPF1-211ENST00000600868 DOCK8Q8NF50 2099 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 PSTPIP1O43586 416 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 LATS1O95835 1130 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 FTCDO95954 541 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 KLKB1P03952 638 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 HMBSP08397 361 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 KRT7P08729 469 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 USP4Q13107 963 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 ZNF77Q15935 545 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 ACBD5Q5T8D3 534 aaPredicted RBP14.89□□□□□ -0.03
UPF1-211ENST00000600868 MEI1Q5TIA1 1274 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 Q6ZNB5 142 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 HTR3DQ70Z44 454 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 ATP6V0D2Q8N8Y2 350 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 WBP2Q969T9 261 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 ACSF2Q96CM8 615 aaPredicted RBP14.89□□□□□ -0.03
UPF1-211ENST00000600868 BTN2A3PQ96KV6 586 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 ANLNQ9NQW6 1124 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 CFAP97Q9P2B7 532 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 LSM7Q9UK45 103 aaKnown RBP14.89□□□□□ -0.03
UPF1-211ENST00000600868 FZD10Q9ULW2 581 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 ZNF510Q9Y2H8 683 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 SH3BP1Q9Y3L3 701 aa14.89□□□□□ -0.03
UPF1-211ENST00000600868 E2F8A0AVK6 867 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 CCDC66A2RUB6 948 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 MIF4GDA9UHW6 222 aaKnown RBP14.88□□□□□ -0.03
UPF1-211ENST00000600868 I6L893 689 aaPredicted RBP14.88□□□□□ -0.03
UPF1-211ENST00000600868 ACSL4O60488 711 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 IRF1P10914 325 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 FCARP24071 287 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 CTNNA2P26232 953 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 CORO1AP31146 461 aaKnown RBP14.88□□□□□ -0.03
UPF1-211ENST00000600868 CTNNA1P35221 906 aaKnown RBP14.88□□□□□ -0.03
UPF1-211ENST00000600868 SLC11A2P49281 568 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 GNG11P61952 73 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 TXNRD3NBQ6F5E7 133 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 PTCRAQ6ISU1 281 aaPredicted RBP14.88□□□□□ -0.03
UPF1-211ENST00000600868 NYAP1Q6ZVC0 841 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 SLC35F6Q8N357 371 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 HES6Q96HZ4 224 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 C1orf74Q96LT6 269 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 SNRNP25Q9BV90 132 aaKnown RBP14.88□□□□□ -0.03
UPF1-211ENST00000600868 PHF7Q9BWX1 381 aaPredicted RBP14.88□□□□□ -0.03
UPF1-211ENST00000600868 OSBPL2Q9H1P3 480 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 ZWILCHQ9H900 591 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 ZFP14Q9HCL3 533 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 STOML2Q9UJZ1 356 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 AGO1Q9UL18 857 aaKnown RBP14.88□□□□□ -0.03
UPF1-211ENST00000600868 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.88□□□□□ -0.03
UPF1-211ENST00000600868 NR2E1Q9Y466 385 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 JRKLQ9Y4A0 524 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 PCDHA3Q9Y5H8 950 aa14.88□□□□□ -0.03
UPF1-211ENST00000600868 PAGE1O75459 146 aa14.87□□□□□ -0.03
UPF1-211ENST00000600868 RARAP10276 462 aa14.87□□□□□ -0.03
UPF1-211ENST00000600868 MLLT6P55198 1093 aaPredicted RBP14.87□□□□□ -0.03
UPF1-211ENST00000600868 NRG1Q02297 640 aaPredicted RBP14.87□□□□□ -0.03
UPF1-211ENST00000600868 SMTNL2Q2TAL5 461 aa14.87□□□□□ -0.03
UPF1-211ENST00000600868 EFHC2Q5JST6 749 aa14.87□□□□□ -0.03
UPF1-211ENST00000600868 MTSS1LQ765P7 747 aa14.87□□□□□ -0.03
UPF1-211ENST00000600868 DENND1CQ8IV53 801 aa14.87□□□□□ -0.03
UPF1-211ENST00000600868 RIN3Q8TB24 985 aa14.87□□□□□ -0.03
UPF1-211ENST00000600868 ELSPBP1Q96BH3 223 aa14.87□□□□□ -0.03
UPF1-211ENST00000600868 RSPRY1Q96DX4 576 aa14.87□□□□□ -0.03
UPF1-211ENST00000600868 LRRC3BQ96PB8 259 aa14.87□□□□□ -0.03
UPF1-211ENST00000600868 TMPRSS4Q9NRS4 437 aa14.87□□□□□ -0.03
UPF1-211ENST00000600868 DDX56Q9NY93 547 aaKnown RBP14.87□□□□□ -0.03
UPF1-211ENST00000600868 AP4E1Q9UPM8 1137 aa14.87□□□□□ -0.03
UPF1-211ENST00000600868 HEPACAM2A8MVW5 462 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 ANHXE9PGG2 379 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 MOCS2O96007 188 aaPredicted RBP14.86□□□□□ -0.03
UPF1-211ENST00000600868 TUBB4AP04350 444 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 TNNT1P13805 278 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 VIPR2P41587 438 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 PEX5P50542 639 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 ZNF135P52742 658 aaPredicted RBP14.86□□□□□ -0.03
UPF1-211ENST00000600868 ETF1P62495 437 aaKnown RBP14.86□□□□□ -0.03
UPF1-211ENST00000600868 TFF2Q03403 129 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 RPS6KA1Q15418 735 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 DPYSL2Q16555 572 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 ATP13A4Q4VNC1 1196 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 MS4A13Q5J8X5 152 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 KCNT1Q5JUK3 1230 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 ADGRF1Q5T601 910 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 PIK3R6Q5UE93 754 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 TANGO2Q6ICL3 276 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 FAM217AQ8IXS0 508 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 KATNAL2Q8IYT4 538 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 PLCD3Q8N3E9 789 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 UBL4BQ8N7F7 174 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 TDRD5Q8NAT2 981 aaKnown RBP14.86□□□□□ -0.03
UPF1-211ENST00000600868 FAM71BQ8TC56 605 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 BPIFB1Q8TDL5 484 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms