RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PDK1Q15118 436 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 PPP4R1Q8TF05 950 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 GPRASP2Q96D09 838 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 HAPLN3Q96S86 360 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 WDR27A2RRH5 827 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 IDH3AP50213 366 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 NUDT2P50583 147 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 PPM1LQ5SGD2 360 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 CATSPERGQ6ZRH7 1159 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 MARK4Q96L34 752 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 KLC2Q9H0B6 622 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 ADAMTS5Q9UNA0 930 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 PPME1Q9Y570 386 aa18.91■□□□□ 0.62
UPF1-210ENST00000600689 NOP56O00567 594 aaKnown RBP18.9■□□□□ 0.62
UPF1-210ENST00000600689 ADCY6O43306 1168 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 C1QAP02745 245 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 CLDN10P78369 228 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 NOMO1Q15155 1222 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 CA9Q16790 459 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 CMC1Q7Z7K0 106 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 DCUN1D1Q96GG9 259 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 PRPSAP2O60256 369 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 SNNO75324 88 aaPredicted RBP18.9■□□□□ 0.62
UPF1-210ENST00000600689 SAT1P21673 171 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 WASHC5Q12768 1159 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 PABPC1LQ4VXU2 614 aaKnown RBP18.9■□□□□ 0.62
UPF1-210ENST00000600689 KLHDC10Q6PID8 442 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 KYAT3Q6YP21 454 aaKnown RBP18.9■□□□□ 0.62
UPF1-210ENST00000600689 XYLT1Q86Y38 959 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 METTL25Q8N6Q8 603 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 FAM156AQ8NDB6 213 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 RXFP2Q8WXD0 754 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 SLC7A3Q8WY07 619 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 LENG1Q96BZ8 264 aaPredicted RBP18.9■□□□□ 0.62
UPF1-210ENST00000600689 DTNBP1Q96EV8 351 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 TEX13BQ9BXU2 312 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 C17orf75Q9HAS0 396 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 BTBD7Q9P203 1132 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 PHF24Q9UPV7 400 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 PSAT1Q9Y617 370 aa18.9■□□□□ 0.62
UPF1-210ENST00000600689 POLR2AP24928 1970 aaKnown RBP18.9■□□□□ 0.62
UPF1-210ENST00000600689 LSM8O95777 96 aaKnown RBP18.89■□□□□ 0.62
UPF1-210ENST00000600689 AMHP03971 560 aa18.89■□□□□ 0.62
UPF1-210ENST00000600689 AOC1P19801 751 aa18.89■□□□□ 0.62
UPF1-210ENST00000600689 PTPN7P35236 360 aa18.89■□□□□ 0.62
UPF1-210ENST00000600689 FDFT1P37268 417 aa18.89■□□□□ 0.62
UPF1-210ENST00000600689 PPP2R5DQ14738 602 aa18.89■□□□□ 0.62
UPF1-210ENST00000600689 UGT2A3Q6UWM9 527 aa18.89■□□□□ 0.62
UPF1-210ENST00000600689 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.89■□□□□ 0.62
UPF1-210ENST00000600689 ITFG2Q969R8 447 aa18.89■□□□□ 0.62
UPF1-210ENST00000600689 RSAD1Q9HA92 442 aa18.89■□□□□ 0.62
UPF1-210ENST00000600689 USP29Q9HBJ7 922 aa18.89■□□□□ 0.62
UPF1-210ENST00000600689 TMEM165Q9HC07 324 aa18.89■□□□□ 0.62
UPF1-210ENST00000600689 SSC5DA1L4H1 1573 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 GJB1P08034 283 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 EIF4BP23588 611 aaKnown RBP18.89■□□□□ 0.61
UPF1-210ENST00000600689 PCSK6P29122 969 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 YWHAEP62258 255 aaKnown RBP18.89■□□□□ 0.61
UPF1-210ENST00000600689 TUBB3Q13509 450 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 WDR55Q9H6Y2 383 aaPredicted RBP18.89■□□□□ 0.61
UPF1-210ENST00000600689 ACAD9Q9H845 621 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 PAK5Q9P286 719 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 STX16-NPEPL1H3BU86 382 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 ZBTB14O43829 449 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 FGF3P11487 239 aaPredicted RBP18.89■□□□□ 0.61
UPF1-210ENST00000600689 TAP1Q03518 808 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 OLIG2Q13516 323 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 EEPD1Q7L9B9 569 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 LRRC71Q8N4P6 559 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 PLD5Q8N7P1 536 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 NCSTNQ92542 709 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 HEXIM2Q96MH2 286 aaKnown RBP18.89■□□□□ 0.61
UPF1-210ENST00000600689 MRPL1Q9BYD6 325 aaKnown RBP18.89■□□□□ 0.61
UPF1-210ENST00000600689 HSFX1Q9UBD0 423 aa18.89■□□□□ 0.61
UPF1-210ENST00000600689 CCDC78A2IDD5 438 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 VILLO15195 856 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 TFAP2AP05549 437 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 SRGAP2BP0DMP2 458 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 TREML2Q5T2D2 321 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 MBLAC2Q68D91 279 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 SLFN12LQ6IEE8 588 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 AAGABQ6PD74 315 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 LRGUKQ96M69 825 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 TMEM216Q9P0N5 145 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 MYO18AQ92614 2054 aaKnown RBP18.88■□□□□ 0.61
UPF1-210ENST00000600689 CHADO15335 359 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 KLHL2O95198 593 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 SMIM18P0DKX4 95 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 ENO3P13929 434 aaPredicted RBP18.88■□□□□ 0.61
UPF1-210ENST00000600689 CCR10P46092 362 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 ATXN1P54253 815 aaKnown RBP18.88■□□□□ 0.61
UPF1-210ENST00000600689 DUOXA2Q1HG44 320 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 FAM91A1Q658Y4 838 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 ABHD15Q6UXT9 468 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 AMIGO2Q86SJ2 522 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 LCA5Q86VQ0 697 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 NIPA2Q8N8Q9 360 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 ZSCAN18Q8TBC5 510 aaPredicted RBP18.88■□□□□ 0.61
UPF1-210ENST00000600689 MIS12Q9H081 205 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 CHCHD3Q9NX63 227 aaKnown RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms