RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ATP11AP98196 1134 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 MTA1Q13330 715 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 C15orf59Q2T9L4 293 aaPredicted RBP20.09■□□□□ 0.81
UPF1-209ENST00000600310 LY6G5CQ5SRR4 150 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 ADGRF1Q5T601 910 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 SND1Q7KZF4 910 aaKnown RBP eCLIP20.09■□□□□ 0.81
UPF1-209ENST00000600310 STRADAQ7RTN6 431 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 RALGPS2Q86X27 583 aaPredicted RBP20.09■□□□□ 0.81
UPF1-209ENST00000600310 SIX5Q8N196 739 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 ATP6V0D2Q8N8Y2 350 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 FNIP1Q8TF40 1166 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 RNF34Q969K3 372 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 SHDQ96IW2 340 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 BAG1Q99933 345 aaPredicted RBP20.09■□□□□ 0.81
UPF1-209ENST00000600310 CNPY3Q9BT09 278 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 PACSIN1Q9BY11 444 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 SPHK2Q9NRA0 654 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 SLC12A6Q9UHW9 1150 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 PIAS3Q9Y6X2 628 aa20.09■□□□□ 0.81
UPF1-209ENST00000600310 SOWAHDA6NJG2 315 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 SPECC1L-ADORA2AF8WAN1 911 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 GFRA2O00451 464 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 HOXC11O43248 304 aaPredicted RBP20.08■□□□□ 0.81
UPF1-209ENST00000600310 CTHP32929 405 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 GJA4P35212 333 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 SOX9P48436 509 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 ATXN1P54253 815 aaKnown RBP20.08■□□□□ 0.81
UPF1-209ENST00000600310 STARD6P59095 220 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 AMPD2Q01433 879 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 OGDHQ02218 1023 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 GSE1Q14687 1217 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 BRMS1LQ5PSV4 323 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 C10orf76Q5T2E6 689 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 C1orf228Q6PIY5 440 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 TPRG1Q6ZUI0 275 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 TMEM25Q86YD3 366 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 TMEM139Q8IV31 216 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 CTNNBL1Q8WYA6 563 aaPredicted RBP20.08■□□□□ 0.81
UPF1-209ENST00000600310 ARHGEF26Q96DR7 871 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 BTN2A3PQ96KV6 586 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 DDX50Q9BQ39 737 aaKnown RBP20.08■□□□□ 0.81
UPF1-209ENST00000600310 WDCPQ9H6R7 721 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 ARHGEF38Q9NXL2 777 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 MARK1Q9P0L2 795 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 INTUQ9ULD6 942 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 PAXBP1Q9Y5B6 917 aa20.08■□□□□ 0.81
UPF1-209ENST00000600310 EPN1Q9Y6I3 576 aaPredicted RBP20.08■□□□□ 0.81
UPF1-209ENST00000600310 TMEM221A6NGB7 291 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 SHISA7A6NL88 538 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 M0R296 226 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 MAN2B1O00754 1011 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 CCP110O43303 1012 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 MOCS2O96007 188 aaPredicted RBP20.07■□□□□ 0.8
UPF1-209ENST00000600310 TMEM253P0C7T8 217 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 ADH5P11766 374 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 GAD2Q05329 585 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 CDO1Q16878 200 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 GAB4Q2WGN9 574 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 FAM133BQ5BKY9 247 aaKnown RBP20.07■□□□□ 0.8
UPF1-209ENST00000600310 SH3PXD2AQ5TCZ1 1133 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 NADSYN1Q6IA69 706 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 CHFRQ96EP1 664 aa20.07■□□□□ 0.8
UPF1-209ENST00000600310 IRX2Q9BZI1 471 aaPredicted RBP20.07■□□□□ 0.8
UPF1-209ENST00000600310 XPO7Q9UIA9 1087 aaKnown RBP20.07■□□□□ 0.8
UPF1-209ENST00000600310 EIF3CLB5ME19 914 aaKnown RBP20.06■□□□□ 0.8
UPF1-209ENST00000600310 NDUFA10O95299 355 aa20.06■□□□□ 0.8
UPF1-209ENST00000600310 COL4A2P08572 1712 aa20.06■□□□□ 0.8
UPF1-209ENST00000600310 PSMA2P25787 234 aa20.06■□□□□ 0.8
UPF1-209ENST00000600310 VCPP55072 806 aaKnown RBP20.06■□□□□ 0.8
UPF1-209ENST00000600310 HDAC4P56524 1084 aa20.06■□□□□ 0.8
UPF1-209ENST00000600310 SPA17Q15506 151 aa20.06■□□□□ 0.8
UPF1-209ENST00000600310 RAD9BQ6WBX8 426 aa20.06■□□□□ 0.8
UPF1-209ENST00000600310 TPGS1Q6ZTW0 290 aa20.06■□□□□ 0.8
UPF1-209ENST00000600310 FAM172AQ8WUF8 416 aa20.06■□□□□ 0.8
UPF1-209ENST00000600310 EIF3CQ99613 913 aaKnown RBP20.06■□□□□ 0.8
UPF1-209ENST00000600310 NUP85Q9BW27 656 aa20.06■□□□□ 0.8
UPF1-209ENST00000600310 TRIM7Q9C029 511 aa20.06■□□□□ 0.8
UPF1-209ENST00000600310 TKTL2Q9H0I9 626 aa20.06■□□□□ 0.8
UPF1-209ENST00000600310 GOLGA6L7A0A1B0GV03 622 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 DESP17661 470 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 SLC6A4P31645 630 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 MAGEA1P43355 309 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 ZNF252P-AS1Q0IIN9 211 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 ANO4Q32M45 955 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 RAB6CQ53S08 254 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 TXNDC11Q6PKC3 985 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 ZNF852Q6ZMS4 543 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 FAM131BQ86XD5 332 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 FAM3CQ92520 227 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 BBS2Q9BXC9 721 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 RAB6CQ9H0N0 254 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 ANLNQ9NQW6 1124 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 UVRAGQ9P2Y5 699 aa20.05■□□□□ 0.8
UPF1-209ENST00000600310 KANSL1LA0AUZ9 987 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 I6L893 689 aaPredicted RBP20.04■□□□□ 0.8
UPF1-209ENST00000600310 TRDMT1O14717 391 aaKnown RBP20.04■□□□□ 0.8
UPF1-209ENST00000600310 PAGE1O75459 146 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 PENKP01210 267 aaPredicted RBP20.04■□□□□ 0.8
UPF1-209ENST00000600310 CYBBP04839 570 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 OPRD1P41143 372 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms