RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 RHOT2Q8IXI1 618 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 EMC1Q8N766 993 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 TTC16Q8NEE8 873 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 ST13P5Q8NFI4 369 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 JOSD2Q8TAC2 188 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 ADAM32Q8TC27 787 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 ASIC4Q96FT7 647 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 ZFYVE19Q96K21 471 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 CFAP57Q96MR6 1250 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 TBCBQ99426 244 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 LINC00597Q9H2U6 94 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 EBF3Q9H4W6 596 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 HPS4Q9NQG7 708 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 ARHGEF3Q9NR81 526 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 MRPS17Q9Y2R5 130 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 MUC3AQ02505 3323 aa17.2■□□□□ 0.34
SHKBP1-219ENST00000599575 HOXC11O43248 304 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 STARD6P59095 220 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 KRT83P78385 493 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 PIGHQ14442 188 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 DHCR24Q15392 516 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 MLF2Q15773 248 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 ZC3H12AQ5D1E8 599 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 OTUD1Q5VV17 481 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 TRNP1Q6NT89 227 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 RHBDF2Q6PJF5 856 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 TRIM67Q6ZTA4 783 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 SUGP1Q8IWZ8 645 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 C1orf74Q96LT6 269 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 HAPLN3Q96S86 360 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 PIGVQ9NUD9 493 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 SPTLC3Q9NUV7 552 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 ARHGEF38Q9NXL2 777 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 GTSE1Q9NYZ3 720 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 IP6K2Q9UHH9 426 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 PIAS3Q9Y6X2 628 aa17.19■□□□□ 0.34
SHKBP1-219ENST00000599575 HELZP42694 1942 aaKnown RBP17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 TYW5A2RUC4 315 aaKnown RBP17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 MYO1FO00160 1098 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 RNF8O76064 485 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 CYP17A1P05093 508 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 MAGEA1P43355 309 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 PITX1P78337 314 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 MPPE1Q53F39 396 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 TTC39BQ5VTQ0 682 aaPredicted RBP17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 TRIM68Q6AZZ1 485 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 ZNF852Q6ZMS4 543 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 PHLDB2Q86SQ0 1253 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 TMEM139Q8IV31 216 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 NIPA2Q8N8Q9 360 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 FAM172AQ8WUF8 416 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 WBP2Q969T9 261 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 NTAN1Q96AB6 310 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 NUP85Q9BW27 656 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 OSBPL6Q9BZF3 934 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 RETREG1Q9H6L5 497 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 MYO1AQ9UBC5 1043 aa17.18■□□□□ 0.34
SHKBP1-219ENST00000599575 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 GFRA2O00451 464 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 ARHGAP6O43182 974 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 ATMINO43313 823 aaPredicted RBP17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 MTA2O94776 668 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 ADH5P11766 374 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 ARSAP15289 507 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 PSMA2P25787 234 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 GJA4P35212 333 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 PCK1P35558 622 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 ATP11AP98196 1134 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 TNK2Q07912 1038 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 LY6G5CQ5SRR4 150 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 PSTKQ8IV42 348 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 CCDC26Q8TAB7 109 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 RFFLQ8WZ73 363 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 XPO6Q96QU8 1125 aaKnown RBP17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 SLC2A11Q9BYW1 496 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 TKTL2Q9H0I9 626 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 HEBP1Q9NRV9 189 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 CTTNBP2NLQ9P2B4 639 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 KIF26AQ9ULI4 1882 aaPredicted RBP17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 PCDHA13Q9Y5I0 950 aa17.17■□□□□ 0.34
SHKBP1-219ENST00000599575 SYNJ2BP-COX16A0A087WUM0 186 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 A0A0A6YYK5 440 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 FAM170AA1A519 330 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 SOWAHDA6NJG2 315 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 SPECC1L-ADORA2AF8WAN1 911 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 CCP110O43303 1012 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 PENKP01210 267 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 CTHP32929 405 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 ADRA1BP35368 520 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 ARHGAP25P42331 645 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 HADHBP55084 474 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 HDAC4P56524 1084 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 NRG1Q02297 640 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 SCAPQ12770 1279 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 C15orf59Q2T9L4 293 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 FAM133BQ5BKY9 247 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 NUDT18Q6ZVK8 323 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 BMP8AQ7Z5Y6 402 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 LRRC8AQ8IWT6 810 aa17.16■□□□□ 0.34
SHKBP1-219ENST00000599575 ZNF564Q8TBZ8 553 aaPredicted RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms