RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TAF3Q5VWG9 929 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 NADSYN1Q6IA69 706 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 ASCL5Q7RTU5 278 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 LUZP1Q86V48 1076 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 WDR5BQ86VZ2 330 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 XYLT1Q86Y38 959 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 CAMKK1Q8N5S9 505 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 IL17RCQ8NAC3 791 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 SUMF1Q8NBK3 374 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 NKD2Q969F2 451 aaPredicted RBP16.79■□□□□ 0.28
TRIM28-213ENST00000598355 EPC1Q9H2F5 836 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 PLK2Q9NYY3 685 aa16.79■□□□□ 0.28
TRIM28-213ENST00000598355 NYNRINQ9P2P1 1898 aaKnown RBP16.79■□□□□ 0.28
TRIM28-213ENST00000598355 WDR87Q6ZQQ6 2873 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 PTPRZ1P23471 2315 aaPredicted RBP16.78■□□□□ 0.28
TRIM28-213ENST00000598355 ACSL4O60488 711 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 SLC6A4P31645 630 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 DGKGP49619 791 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 GSCP56915 257 aaPredicted RBP16.78■□□□□ 0.28
TRIM28-213ENST00000598355 DMC1Q14565 340 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 MPPE1Q53F39 396 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 MPP7Q5T2T1 576 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 TRIM72Q6ZMU5 477 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 ARCQ7LC44 396 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 LONP2Q86WA8 852 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 DEFB106AQ8N104 65 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 NT5C3BQ969T7 300 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 PRICKLE1Q96MT3 831 aaPredicted RBP16.78■□□□□ 0.28
TRIM28-213ENST00000598355 NAP1L5Q96NT1 182 aaPredicted RBP16.78■□□□□ 0.28
TRIM28-213ENST00000598355 SYT11Q9BT88 431 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 SLC2A11Q9BYW1 496 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 POLR3BQ9NW08 1133 aaPredicted RBP16.78■□□□□ 0.28
TRIM28-213ENST00000598355 CFAP54Q96N23 3096 aa16.78■□□□□ 0.28
TRIM28-213ENST00000598355 PRRT4C9JH25 899 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 CAPN9O14815 690 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 ADAM23O75077 832 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 CYBBP04839 570 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 UNGP13051 313 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-213ENST00000598355 MMP8P22894 467 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 PBX1P40424 430 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 SLC11A2P49281 568 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 SEC13P55735 322 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 CENPCQ03188 943 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 NR1I3Q14994 352 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 C2orf27AQ580R0 203 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 DCAF6Q58WW2 860 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 C10orf76Q5T2E6 689 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 PIK3R6Q5UE93 754 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 NAA35Q5VZE5 725 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 OR6B2Q6IFH4 312 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 BNIPLQ7Z465 357 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 RASSF3Q86WH2 238 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 ERICH1Q86X53 443 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.77■□□□□ 0.28
TRIM28-213ENST00000598355 ADAM32Q8TC27 787 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 BHMTQ93088 406 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 C18orf8Q96DM3 657 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 PGAP3Q96FM1 320 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-213ENST00000598355 PCMTD1Q96MG8 357 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-213ENST00000598355 NPY6RQ99463 290 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 ADAM33Q9BZ11 813 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 CD248Q9HCU0 757 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 EBF1Q9UH73 591 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 CLEC4EQ9ULY5 219 aa16.77■□□□□ 0.28
TRIM28-213ENST00000598355 RALGAPA1Q6GYQ0 2036 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 TNRC6BQ9UPQ9 1833 aaKnown RBP16.76■□□□□ 0.27
TRIM28-213ENST00000598355 TBC1D3BA6NDS4 549 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 GFRA3O60609 400 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 LMNAP02545 664 aaKnown RBP16.76■□□□□ 0.27
TRIM28-213ENST00000598355 HNRNPLP14866 589 aaKnown RBP eCLIP16.76■□□□□ 0.27
TRIM28-213ENST00000598355 CNR2P34972 360 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 NOS2P35228 1153 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 MATKP42679 507 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 FNTBP49356 437 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 SGSHP51688 502 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 PTP4A2Q12974 167 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 CRY1Q16526 586 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 FILIP1LQ4L180 1135 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 FIGNQ5HY92 759 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 EMC10Q5UCC4 262 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 NUDT18Q6ZVK8 323 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 KIAA0907Q7Z7F0 614 aaPredicted RBP16.76■□□□□ 0.27
TRIM28-213ENST00000598355 ALYREFQ86V81 257 aaKnown RBP16.76■□□□□ 0.27
TRIM28-213ENST00000598355 ALLCQ8N6M5 410 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 ZNF513Q8N8E2 541 aaPredicted RBP16.76■□□□□ 0.27
TRIM28-213ENST00000598355 MSANTD4Q8NCY6 345 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 ATRIPQ8WXE1 791 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 HHIPQ96QV1 700 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 PCDHB18PQ96TA0 734 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 PDCL3Q9H2J4 239 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 SYNCQ9H7C4 482 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 RRN3Q9NYV6 651 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 CALCOCO1Q9P1Z2 691 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 TMEM59LQ9UK28 342 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 SLC8A2Q9UPR5 921 aa16.76■□□□□ 0.27
TRIM28-213ENST00000598355 CHD5Q8TDI0 1954 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 KCNU1A8MYU2 1149 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 SGK1O00141 431 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 GRAP2O75791 330 aa16.75■□□□□ 0.27
TRIM28-213ENST00000598355 KLF8O95600 359 aaPredicted RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms