RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 EBF3Q9H4W6 596 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 TMPRSS4Q9NRS4 437 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 HESX1Q9UBX0 185 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.74■□□□□ 0.11
UPF1-204ENST00000596842 BPGMP07738 259 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 MGAT1P26572 445 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 SLC1A6P48664 564 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 C11orf91Q3C1V1 193 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 DPY19L2Q6NUT2 758 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 CATSPERGQ6ZRH7 1159 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 GSDMBQ8TAX9 411 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 NLRP7Q8WX94 980 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 ZNF212Q9UDV6 495 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 PSAT1Q9Y617 370 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 DNAH12Q6ZR08 3092 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 C2CD4BA6NLJ0 364 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 FAM189A1O60320 539 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 TGDSO95455 350 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 KRT72Q14CN4 511 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 C10orf107Q8IVU9 208 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 PQLC3Q8N755 202 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 AZIN2Q96A70 460 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 NIFKQ9BYG3 293 aaKnown RBP15.74■□□□□ 0.11
UPF1-204ENST00000596842 EFR3BQ9Y2G0 817 aa15.74■□□□□ 0.11
UPF1-204ENST00000596842 DYTNA2CJ06 578 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 ACKR2O00590 384 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 AHCYL1O43865 530 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 CILPO75339 1184 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 SPAG6O75602 509 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 NPTXRO95502 500 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 P4HA1P13674 534 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 OCRLQ01968 901 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 SDCCAG8Q86SQ7 713 aaPredicted RBP15.73■□□□□ 0.11
UPF1-204ENST00000596842 HPS6Q86YV9 775 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 ADGRF2Q8IZF7 708 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 LHX5Q9H2C1 402 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 CNTN3Q9P232 1028 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 FIS1Q9Y3D6 152 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 HES2Q9Y543 173 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 COL2A1P02458 1487 aaPredicted RBP15.73■□□□□ 0.11
UPF1-204ENST00000596842 SMAPO00193 183 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 AIM2O14862 343 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 TM7SF2O76062 418 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 CYP3A5P20815 502 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 INHBEP58166 350 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 TMEM132DQ14C87 1099 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 Q3C1V9 767 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 NXNQ6DKJ4 435 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 FAM136AQ96C01 138 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 NT5C1AQ9BXI3 368 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 SOX13Q9UN79 622 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 KCNK1O00180 336 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 DNAJC6O75061 913 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 LYNP07948 512 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 CDH5P33151 784 aaPredicted RBP15.73■□□□□ 0.11
UPF1-204ENST00000596842 FNIP1Q8TF40 1166 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 ECSITQ9BQ95 431 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 COL4A5P29400 1685 aa15.73■□□□□ 0.11
UPF1-204ENST00000596842 TCN1P20061 433 aaPredicted RBP15.72■□□□□ 0.11
UPF1-204ENST00000596842 SERPINB5P36952 375 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 SLC10A2Q12908 348 aaPredicted RBP15.72■□□□□ 0.11
UPF1-204ENST00000596842 CDC16Q13042 620 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 TRMT5Q32P41 509 aaKnown RBP15.72■□□□□ 0.11
UPF1-204ENST00000596842 DNAL1Q4LDG9 190 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 DNAAF3Q8N9W5 541 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 ADAM32Q8TC27 787 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 PIWIL2Q8TC59 973 aaKnown RBP15.72■□□□□ 0.11
UPF1-204ENST00000596842 MCRS1Q96EZ8 462 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 EBNA1BP2Q99848 306 aaKnown RBP15.72■□□□□ 0.11
UPF1-204ENST00000596842 OXCT2Q9BYC2 517 aaPredicted RBP15.72■□□□□ 0.11
UPF1-204ENST00000596842 FETUBQ9UGM5 382 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 AK5Q9Y6K8 562 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 SOWAHBA6NEL2 793 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 ATP9BO43861 1147 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 VDRP11473 427 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 COPAP53621 1224 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 TARBP2Q15633 366 aaKnown RBP15.72■□□□□ 0.11
UPF1-204ENST00000596842 FOXB2Q5VYV0 432 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 HIC2Q96JB3 615 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 NRDE2Q9H7Z3 1164 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 THAP1Q9NVV9 213 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 GOT1P17174 413 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 IL4RP24394 825 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 NME3Q13232 169 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 MAP7Q14244 749 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 EFHC1Q5JVL4 640 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 OR52E8Q6IFG1 317 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 SH2D5Q6ZV89 423 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 CDKL2Q92772 493 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 FRMD8P1Q9BZ68 369 aaPredicted RBP15.72■□□□□ 0.11
UPF1-204ENST00000596842 CAB39LQ9H9S4 337 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 PDGFCQ9NRA1 345 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 GGA3Q9NZ52 723 aa15.72■□□□□ 0.11
UPF1-204ENST00000596842 A8MXQ7 604 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 PPEF2O14830 753 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 PGM3O95394 542 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 PEX2P28328 305 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 BOLA3Q53S33 107 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 METTL7BQ6UX53 244 aa15.71■□□□□ 0.11
UPF1-204ENST00000596842 CXCL16Q9H2A7 254 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms