RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 WFIKKN2Q8TEU8 576 aa18.46■□□□□ 0.55
SHKBP1-204ENST00000594862 TMA16Q96EY4 203 aaKnown RBP18.46■□□□□ 0.55
SHKBP1-204ENST00000594862 GABRG3Q99928 467 aa18.46■□□□□ 0.55
SHKBP1-204ENST00000594862 STK33Q9BYT3 514 aa18.46■□□□□ 0.55
SHKBP1-204ENST00000594862 SYNCQ9H7C4 482 aa18.46■□□□□ 0.55
SHKBP1-204ENST00000594862 ACP6Q9NPH0 428 aa18.46■□□□□ 0.55
SHKBP1-204ENST00000594862 TMEM51Q9NW97 253 aa18.46■□□□□ 0.55
SHKBP1-204ENST00000594862 USP18Q9UMW8 372 aa18.46■□□□□ 0.55
SHKBP1-204ENST00000594862 FHOD1Q9Y613 1164 aa18.46■□□□□ 0.55
SHKBP1-204ENST00000594862 EML5Q05BV3 1969 aa18.46■□□□□ 0.55
SHKBP1-204ENST00000594862 TCRBV21S2A2A0A5A6 115 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 PRRT4C9JH25 899 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 TRIM24O15164 1050 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 ACSL4O60488 711 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 ADAM23O75077 832 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 LSM8O95777 96 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 FYNP06241 537 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 SLC2A3P11169 496 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 CLCN1P35523 988 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 STARD3Q14849 445 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 CSRP2Q16527 193 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 EGFLAMQ63HQ2 1017 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 C11orf57Q6ZUT1 292 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 SLC47A2Q86VL8 602 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 HJURPQ8NCD3 748 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 TMEM35BQ8NCS4 154 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 C1orf131Q8NDD1 294 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 NAA15Q9BXJ9 866 aaKnown RBP18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 POLR3BQ9NW08 1133 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 FANCLQ9NW38 375 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 CYTH4Q9UIA0 394 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 AJAP1Q9UKB5 411 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 NAALADL1Q9UQQ1 740 aa18.45■□□□□ 0.54
SHKBP1-204ENST00000594862 SPAG17Q6Q759 2223 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 F8VZ95 297 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 CYP11B1P15538 503 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 HOXD9P28356 352 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 GBP1P32455 592 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 CDK17Q00537 523 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 ARID5AQ03989 594 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 PLK5Q496M5 336 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 DPY19L2P1Q6NXN4 242 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 KBTBD6Q86V97 674 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 ZNF677Q86XU0 584 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 PASD1Q8IV76 773 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 CCDC117Q8IWD4 279 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 OLIG1Q8TAK6 271 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 HMGB4Q8WW32 186 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 PIWIL1Q96J94 861 aaKnown RBP18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 FCRL2Q96LA5 508 aaPredicted RBP18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 CPXM1Q96SM3 734 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 TPSD1Q9BZJ3 242 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 VPS16Q9H269 839 aa18.44■□□□□ 0.54
SHKBP1-204ENST00000594862 PLXND1Q9Y4D7 1925 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 HOXC13P31276 330 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 CDH5P33151 784 aaPredicted RBP18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 SCNN1AP37088 669 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 DPP6P42658 865 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 SPEM2Q0P670 501 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 TAC4Q86UU9 113 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 AHI1Q8N157 1196 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 PGBD3Q8N328 593 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 WDTC1Q8N5D0 677 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 SLC39A13Q96H72 371 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 SLC2A13Q96QE2 648 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 FAM204AQ9H8W3 233 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 SEMA4GQ9NTN9 838 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 RRN3Q9NYV6 651 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 LIMA1Q9UHB6 759 aaKnown RBP18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 SLC12A6Q9UHW9 1150 aa18.43■□□□□ 0.54
SHKBP1-204ENST00000594862 LGALS16A8MUM7 142 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 ZNF217O75362 1048 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 TRUB2O95900 331 aaKnown RBP18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 IGLV3-25P01717 112 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 CDK11BP21127 795 aaKnown RBP18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 P2RY2P41231 377 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 COPB1P53618 953 aaKnown RBP18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 TYRO3Q06418 890 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 GEN1Q17RS7 908 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 DCAF6Q58WW2 860 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 SPDYCQ5MJ68 293 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 PIK3R6Q5UE93 754 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 PMS2CLQ68D20 193 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 RNF43Q68DV7 783 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 SLC26A9Q7LBE3 791 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 ZNF397Q8NF99 534 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 RMDN1Q96DB5 314 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 BTN2A3PQ96KV6 586 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 BPIFA3Q9BQP9 254 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 DUSP15Q9H1R2 295 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 ELOVL2Q9NXB9 296 aa18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 THAP10Q9P2Z0 257 aaPredicted RBP18.42■□□□□ 0.54
SHKBP1-204ENST00000594862 A0A1W2PQF6 199 aa18.41■□□□□ 0.54
SHKBP1-204ENST00000594862 ANTXRLA6NF34 631 aa18.41■□□□□ 0.54
SHKBP1-204ENST00000594862 TSPAN3O60637 253 aa18.41■□□□□ 0.54
SHKBP1-204ENST00000594862 DAB1O75553 588 aa18.41■□□□□ 0.54
SHKBP1-204ENST00000594862 PNMA6AP0CW24 399 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-204ENST00000594862 PTMSP20962 102 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms