RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 NDST4Q9H3R1 872 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 CAPN10Q9HC96 672 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 FANCLQ9NW38 375 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 CLIC5Q9NZA1 410 aa13.07□□□□□ -0.32
UPF1-203ENST00000594504 HYAL3O43820 417 aaPredicted RBP13.06□□□□□ -0.32
UPF1-203ENST00000594504 TSPAN3O60637 253 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 NDUFS2O75306 463 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 TPM2P07951 284 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 CHKAP35790 457 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 TKTL1P51854 596 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 ATXN3P54252 364 aaPredicted RBP13.06□□□□□ -0.32
UPF1-203ENST00000594504 YWHAGP61981 247 aaKnown RBP eCLIP13.06□□□□□ -0.32
UPF1-203ENST00000594504 COG7P83436 770 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 EXOC3L4Q17RC7 722 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 FUT11Q495W5 492 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 RAB41Q5JT25 222 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 ARHGAP17Q68EM7 881 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 TRIM65Q6PJ69 517 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 PIP4P1Q86T03 277 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 TADA2BQ86TJ2 420 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 MINDY1Q8N5J2 469 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 AOPEPQ8N6M6 819 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 UBR7Q8N806 425 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 ANKRD20A12PQ8NF67 263 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 CEP76Q8TAP6 659 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 UBA3Q8TBC4 463 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 SORCS1Q8WY21 1168 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 ZNF419Q96HQ0 510 aaPredicted RBP13.06□□□□□ -0.32
UPF1-203ENST00000594504 PIWIL1Q96J94 861 aaKnown RBP13.06□□□□□ -0.32
UPF1-203ENST00000594504 FAM81BQ96LP2 452 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 CRACR2AQ9BSW2 395 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 TMEM121BQ9BXQ6 578 aaPredicted RBP13.06□□□□□ -0.32
UPF1-203ENST00000594504 ULBP1Q9BZM6 244 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 UBXN6Q9BZV1 441 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 MKRN2Q9H000 416 aaKnown RBP13.06□□□□□ -0.32
UPF1-203ENST00000594504 SLC32A1Q9H598 525 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 MARCH2Q9P0N8 246 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 THAP10Q9P2Z0 257 aaPredicted RBP13.06□□□□□ -0.32
UPF1-203ENST00000594504 SFMBT1Q9UHJ3 866 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 ZMIZ1Q9ULJ6 1067 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 PCDH15Q96QU1 1955 aa13.06□□□□□ -0.32
UPF1-203ENST00000594504 ASCC3Q8N3C0 2202 aaKnown RBP13.06□□□□□ -0.32
UPF1-203ENST00000594504 GFRA2O00451 464 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 PES1O00541 588 aaKnown RBP13.05□□□□□ -0.32
UPF1-203ENST00000594504 ARHGAP33O14559 1287 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 OPHN1O60890 802 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 DPP6P42658 865 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 ZNF165P49910 485 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 PDE4CQ08493 712 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 NCAPHQ15003 741 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 KRT31Q15323 416 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 GOLGA7BQ2TAP0 167 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 TMEM215Q68D42 235 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 RSRC2Q7L4I2 434 aaKnown RBP13.05□□□□□ -0.32
UPF1-203ENST00000594504 ENOSF1Q7L5Y1 443 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 BHLHA9Q7RTU4 235 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 ARHGEF19Q8IW93 802 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 HDDC3Q8N4P3 179 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 ANKRD52Q8NB46 1076 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 DDI1Q8WTU0 396 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 CAMK1GQ96NX5 476 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 GPR174Q9BXC1 333 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 ADAM33Q9BZ11 813 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 PRDM16Q9HAZ2 1276 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 ZNF510Q9Y2H8 683 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 SLC27A6Q9Y2P4 619 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 GON4LQ3T8J9 2241 aa13.05□□□□□ -0.32
UPF1-203ENST00000594504 SMTNL1A8MU46 457 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 ZBED1O96006 694 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 CALCAP01258 141 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 CD59P13987 128 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 ZNF18P17022 549 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 SLC9A1P19634 815 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 PON1P27169 355 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 CD6P30203 668 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 SIM1P81133 766 aaPredicted RBP13.04□□□□□ -0.32
UPF1-203ENST00000594504 ZNF234Q14588 700 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 NFKBIBQ15653 356 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 PLEKHG6Q3KR16 790 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 ZSCAN23Q3MJ62 389 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 PM20D1Q6GTS8 502 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 TMEM270Q6UE05 265 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 RRAGAQ7L523 313 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 CACUL1Q86Y37 369 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 TMPRSS6Q8IU80 811 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 RBBP8NLQ8NC74 664 aaPredicted RBP13.04□□□□□ -0.32
UPF1-203ENST00000594504 EDEM1Q92611 657 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 KAT5Q92993 513 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 TOE1Q96GM8 510 aaKnown RBP13.04□□□□□ -0.32
UPF1-203ENST00000594504 DCLK3Q9C098 648 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 UBE2TQ9NPD8 197 aaPredicted RBP13.04□□□□□ -0.32
UPF1-203ENST00000594504 ITM2CQ9NQX7 267 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 ELOVL2Q9NXB9 296 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 TAB2Q9NYJ8 693 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 WSB2Q9NYS7 404 aaPredicted RBP13.04□□□□□ -0.32
UPF1-203ENST00000594504 APEX2Q9UBZ4 518 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 KLK13Q9UKR3 277 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 TSPAN16Q9UKR8 245 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 PCDHB4Q9Y5E5 795 aa13.04□□□□□ -0.32
UPF1-203ENST00000594504 PIK3R2O00459 728 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms