RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PHF13Q86YI8 300 aaPredicted RBP15.62■□□□□ 0.09
UPF1-202ENST00000594243 ATP6V0D2Q8N8Y2 350 aa15.62■□□□□ 0.09
UPF1-202ENST00000594243 CPLX3Q8WVH0 158 aa15.62■□□□□ 0.09
UPF1-202ENST00000594243 SYN2Q92777 582 aaPredicted RBP15.62■□□□□ 0.09
UPF1-202ENST00000594243 RNF34Q969K3 372 aa15.62■□□□□ 0.09
UPF1-202ENST00000594243 TMA16Q96EY4 203 aaKnown RBP15.62■□□□□ 0.09
UPF1-202ENST00000594243 FAM204AQ9H8W3 233 aa15.62■□□□□ 0.09
UPF1-202ENST00000594243 DNAJC17Q9NVM6 304 aaKnown RBP15.62■□□□□ 0.09
UPF1-202ENST00000594243 DDIT4Q9NX09 232 aa15.62■□□□□ 0.09
UPF1-202ENST00000594243 MIA3Q5JRA6 1907 aa15.62■□□□□ 0.09
UPF1-202ENST00000594243 FAM170AA1A519 330 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 TBC1D3BA6NDS4 549 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 K7EQS6 105 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 M0QYT0 321 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 RNF40O75150 1001 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 F9P00740 461 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 ABCB4P21439 1286 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 DGKGP49619 791 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 MRPS21P82921 87 aaKnown RBP15.61■□□□□ 0.09
UPF1-202ENST00000594243 C1QBPQ07021 282 aaKnown RBP15.61■□□□□ 0.09
UPF1-202ENST00000594243 NME3Q13232 169 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 GAS6Q14393 721 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 ZNF528Q3MIS6 628 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 SLC25A52Q3SY17 297 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 ZC3H12AQ5D1E8 599 aaKnown RBP15.61■□□□□ 0.09
UPF1-202ENST00000594243 GRAMD4Q6IC98 578 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 Q6ZS52 159 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 SND1Q7KZF4 910 aaKnown RBP eCLIP15.61■□□□□ 0.09
UPF1-202ENST00000594243 EZH1Q92800 747 aaPredicted RBP15.61■□□□□ 0.09
UPF1-202ENST00000594243 ATOH1Q92858 354 aaPredicted RBP15.61■□□□□ 0.09
UPF1-202ENST00000594243 BHMTQ93088 406 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 NT5C3BQ969T7 300 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 BTN2A3PQ96KV6 586 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 NPY6RQ99463 290 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 C11orf70Q9BRQ4 267 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 SLC2A11Q9BYW1 496 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 PLK2Q9NYY3 685 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 TMEM59LQ9UK28 342 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 FBXO10Q9UK96 956 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 PAXBP1Q9Y5B6 917 aa15.61■□□□□ 0.09
UPF1-202ENST00000594243 SYNJ2BP-COX16A0A087WUM0 186 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 TYW5A2RUC4 315 aaKnown RBP15.6■□□□□ 0.09
UPF1-202ENST00000594243 KCNU1A8MYU2 1149 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 TSPAN3O60637 253 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 SULT1E1P49888 294 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 GSCP56915 257 aaPredicted RBP15.6■□□□□ 0.09
UPF1-202ENST00000594243 PITX1P78337 314 aaPredicted RBP15.6■□□□□ 0.09
UPF1-202ENST00000594243 CSTF1Q05048 431 aaKnown RBP15.6■□□□□ 0.09
UPF1-202ENST00000594243 KDSRQ06136 332 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 PTP4A2Q12974 167 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 TRIM14Q14142 442 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 MPP7Q5T2T1 576 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 PIK3R6Q5UE93 754 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 SPECC1LQ69YQ0 1117 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 MAML2Q8IZL2 1156 aaPredicted RBP15.6■□□□□ 0.09
UPF1-202ENST00000594243 PHTF2Q8N3S3 785 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 TERB1Q8NA31 727 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 KCNV2Q8TDN2 545 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 PGAP3Q96FM1 320 aaPredicted RBP15.6■□□□□ 0.09
UPF1-202ENST00000594243 VCPIP1Q96JH7 1222 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 SYT11Q9BT88 431 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 ANP32EQ9BTT0 268 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 COX16Q9P0S2 106 aa15.6■□□□□ 0.09
UPF1-202ENST00000594243 GOLGA6L7A0A1B0GV03 622 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 GFRA2O00451 464 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 MOCS2O96007 188 aaPredicted RBP15.59■□□□□ 0.09
UPF1-202ENST00000594243 GYPCP04921 128 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 SERPING1P05155 500 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 TPM1P09493 284 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 CISD3P0C7P0 127 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 SP9P0CG40 484 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 KRT3P12035 628 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 GZMAP12544 262 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 SKILP12757 684 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 CASP14P31944 242 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 NRLP54845 237 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 DEUP1Q05D60 604 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 HSF5Q4G112 596 aaPredicted RBP15.59■□□□□ 0.09
UPF1-202ENST00000594243 FAM133BQ5BKY9 247 aaKnown RBP15.59■□□□□ 0.09
UPF1-202ENST00000594243 MON1BQ7L1V2 547 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 ZNF571Q7Z3V5 609 aaPredicted RBP15.59■□□□□ 0.09
UPF1-202ENST00000594243 VPS36Q86VN1 386 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 ZNF557Q8N988 423 aaPredicted RBP15.59■□□□□ 0.09
UPF1-202ENST00000594243 C3orf20Q8ND61 904 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 RPLP0P6Q8NHW5 317 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 ACDQ96AP0 544 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 SELENOOQ9BVL4 669 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 FAM126AQ9BYI3 521 aaPredicted RBP15.59■□□□□ 0.09
UPF1-202ENST00000594243 WDCPQ9H6R7 721 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 PRMT8Q9NR22 394 aaPredicted RBP15.59■□□□□ 0.09
UPF1-202ENST00000594243 METTL5Q9NRN9 209 aaKnown RBP15.59■□□□□ 0.09
UPF1-202ENST00000594243 SLC27A6Q9Y2P4 619 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 STARD13Q9Y3M8 1113 aa15.59■□□□□ 0.09
UPF1-202ENST00000594243 ANKRD62A6NC57 917 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 SIGLEC16A6NMB1 481 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 PAPSS2O95340 614 aaPredicted RBP15.58■□□□□ 0.08
UPF1-202ENST00000594243 PDGFRAP16234 1089 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 SLC6A4P31645 630 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 FLT3P36888 993 aa15.58■□□□□ 0.08
UPF1-202ENST00000594243 SEC13P55735 322 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms