RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	OSBPL1A	Q9BXW6	950 aa		11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	MARCO	Q9UEW3	520 aa	Predicted RBP	11.98	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	IGKV6D-21	A0A0A0MT36	114 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	DNALI1	O14645	258 aa	Predicted RBP	11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	STRN	O43815	780 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CD86	P42081	329 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	NAMPT	P43490	491 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	FKBP1B	P68106	108 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	IRX4	P78413	519 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CCL14	Q16627	93 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	KHDC1	Q4VXA5	237 aa	Known RBP	11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TAPT1	Q6NXT6	567 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TMEM53	Q6P2H8	277 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	USP37	Q86T82	979 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	OR8H1	Q8NGG4	311 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PPP1R14C	Q8TAE6	165 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	NAF1	Q96HR8	494 aa	Known RBP	11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	MAML3	Q96JK9	1138 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CNDP1	Q96KN2	507 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TCF12	Q99081	682 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	NIFK	Q9BYG3	293 aa	Known RBP	11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	FAM49A	Q9H0Q0	323 aa	Predicted RBP	11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CISH	Q9NSE2	258 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ERAP1	Q9NZ08	941 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PAIP2B	Q9ULR5	123 aa	Known RBP	11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	LCT	P09848	1927 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	NCAM2	O15394	837 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	MAF	O75444	373 aa	Predicted RBP	11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TCEA3	O75764	348 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	LGALS2	P05162	132 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	KRT19	P08727	400 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CD19	P15391	556 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	IL1R2	P27930	398 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CTCF	P49711	727 aa	Predicted RBP	11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ZBTB16	Q05516	673 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	RNF43	Q68DV7	783 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SHQ1	Q6PI26	577 aa	Known RBP	11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	NPNT	Q6UXI9	565 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	METTL3	Q86U44	580 aa	Known RBP	11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	IGDCC3	Q8IVU1	814 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SIX5	Q8N196	739 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ARFGAP1	Q8N6T3	406 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	FAM71D	Q8N9W8	422 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SHCBP1	Q8NEM2	672 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PYROXD1	Q8WU10	500 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	HSPH1	Q92598	858 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SLCO2A1	Q92959	643 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	MIPEP	Q99797	713 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	MECR	Q9BV79	373 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	KATNAL1	Q9BW62	490 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PPP1R12C	Q9BZL4	782 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TRIM8	Q9BZR9	551 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CCSER2	Q9H7U1	834 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	MINDY3	Q9H8M7	445 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ARL8B	Q9NVJ2	186 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	EURL	Q9NYK6	297 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	HEY2	Q9UBP5	337 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	LGALS13	Q9UHV8	139 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	STYXL1	Q9Y6J8	313 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	USH1C	Q9Y6N9	552 aa		11.97	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	LACTBL1	A8MY62	500 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063		H3BRB1	525 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	NDC80	O14777	642 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ZW10	O43264	779 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	FAM189A1	O60320	539 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	EDF1	O60869	148 aa	Known RBP	11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SMPD1	P17405	629 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	MMP8	P22894	467 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	RFC1	P35251	1148 aa	Predicted RBP	11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ETFB	P38117	255 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	OTUD4	Q01804	1114 aa	Known RBP	11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ARHGAP1	Q07960	439 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ACVR2B	Q13705	512 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SH3PXD2A	Q5TCZ1	1133 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SPOCD1	Q6ZMY3	1216 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ENOSF1	Q7L5Y1	443 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SPATA2L	Q8IUW3	424 aa	Predicted RBP	11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	FBXO36	Q8NEA4	188 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	IPMK	Q8NFU5	416 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	ACTL9	Q8TC94	416 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	DENND1A	Q8TEH3	1009 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	UCMA	Q8WVF2	138 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	C10orf82	Q8WW14	230 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TWNK	Q96RR1	684 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TUT1	Q9H6E5	874 aa	Known RBP	11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TXLNG	Q9NUQ3	528 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CLUH	O75153	1309 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TMEM191C	A6NGB0	347 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TTC34	A8MYJ7	566 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CST8	O60676	142 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	MSC	O60682	206 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	IQCF3	P0C7M6	154 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	TMEM191B	P0C7N4	346 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	CCNB1	P14635	433 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SERPINB3	P29508	390 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	RFC5	P40937	340 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	SLC1A1	P43005	524 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	PTDSS1	P48651	473 aa	Known RBP	11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	NR1H3	Q13133	447 aa		11.96	□□□□□ -0.49
CDK5RAP3-231	ENST00000584063	LAMC2	Q13753	1193 aa		11.96	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms