RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 NTSR1P30989 418 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 HTR7P34969 479 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 GSTM5P46439 218 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 PAPOLAP51003 745 aaKnown RBP4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 HNRNPMP52272 730 aaKnown RBP eCLIP4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 TAF12Q16514 161 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 TMEM119Q4V9L6 283 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 FBXO47Q5MNV8 452 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 TREML2Q5T2D2 321 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 ANKRD45Q5TZF3 282 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 KAZNQ674X7 775 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 KIAA0895LQ68EN5 471 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 CCDC70Q6NSX1 233 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 CYP26C1Q6V0L0 522 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 MAVSQ7Z434 540 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 WDR53Q7Z5U6 358 aaPredicted RBP4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 CLASRPQ8N2M8 674 aaKnown RBP4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 OR6Y1Q8NGX8 325 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 NSMCE1Q8WV22 266 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 EIF3CQ99613 913 aaKnown RBP4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 TMLHEQ9NVH6 421 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 ZNF69Q9UC07 566 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 SRP68Q9UHB9 627 aaKnown RBP4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 GABRQQ9UN88 632 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 PROCRQ9UNN8 238 aa4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 LRRFIP2Q9Y608 721 aaKnown RBP4.27□□□□□ -1.73
SMCHD1-209ENST00000583441 GXYLT2A0PJZ3 443 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 WDR27A2RRH5 827 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 HMX3A6NHT5 357 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 AGPSO00116 658 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 DHHO43323 396 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 TMPRSS11DO60235 418 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 CBFA2T3O75081 653 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 FAM155BO75949 473 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 URI1O94763 535 aaPredicted RBP4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 LARGE1O95461 756 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 RHOP08100 348 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 PDHA1P08559 390 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 MPGP29372 298 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 AKT1P31749 480 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 GKP32189 559 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 ADD2P35612 726 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 GRIA3P42263 894 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 MAPK9P45984 424 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 CLCN2P51788 898 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 TFF2Q03403 129 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 TXNRD1Q16881 649 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 TIGD6Q17RP2 521 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 LY6KQ17RY6 165 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 TMEM63BQ5T3F8 832 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 ZNF551Q7Z340 670 aaPredicted RBP4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 TRABD2AQ86V40 505 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 SIRT6Q8N6T7 355 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 XAGE5Q8WWM1 108 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 CPT1BQ92523 772 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 USP13Q92995 863 aaPredicted RBP4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 R3HDM4Q96D70 268 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 PAAF1Q9BRP4 392 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 PYM1Q9BRP8 204 aaKnown RBP4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 EPS8L2Q9H6S3 715 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 ITM2CQ9NQX7 267 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 SNX15Q9NRS6 342 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 NDUFAF4Q9P032 175 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 LPAR3Q9UBY5 353 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 GJD2Q9UKL4 321 aa4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 SCAF8Q9UPN6 1271 aaKnown RBP4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 UBE2J1Q9Y385 318 aaPredicted RBP4.26□□□□□ -1.73
SMCHD1-209ENST00000583441 NCAM2O15394 837 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 SH3BP5O60239 455 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 PMPCBO75439 489 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 FESP07332 822 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 CHRM2P08172 466 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 MMP8P22894 467 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 ADRA1DP25100 572 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 AARSP49588 968 aaKnown RBP eCLIP4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 SP2Q02086 613 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 MTAPQ13126 283 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 CBFBQ13951 182 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 TBC1D25Q3MII6 688 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 TBRG1Q3YBR2 411 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 TTC22Q5TAA0 569 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 SUMO4Q6EEV6 95 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 ANKRD16Q6P6B7 361 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 MMS22LQ6ZRQ5 1243 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 PEG10Q86TG7 708 aaKnown RBP4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 MOGAT3Q86VF5 341 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 FTSJ3Q8IY81 847 aaKnown RBP4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 LRRC71Q8N4P6 559 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 RBMXL3Q8N7X1 1067 aaKnown RBP4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 FAR2Q96K12 515 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 UBXN10Q96LJ8 280 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 HAPLN3Q96S86 360 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 NOTCH4Q99466 2003 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 ELAC1Q9H777 363 aaKnown RBP4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 MLXIPQ9HAP2 919 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 RASSF1Q9NS23 344 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 FBXO28Q9NVF7 368 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 SAGE1Q9NXZ1 904 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 RRN3Q9NYV6 651 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms