RNA–Protein interactions for RNA: ENST00000574099.1

CCDC40-211, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 537 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-211ENST00000574099 CBX4O00257 560 aa18.36■□□□□ 0.53
CCDC40-211ENST00000574099 PCDHGA12O60330 932 aa18.36■□□□□ 0.53
CCDC40-211ENST00000574099 CD58P19256 250 aa18.36■□□□□ 0.53
CCDC40-211ENST00000574099 PSEN1P49768 467 aa18.36■□□□□ 0.53
CCDC40-211ENST00000574099 CLDN10P78369 228 aa18.36■□□□□ 0.53
CCDC40-211ENST00000574099 CAMK2GQ13555 558 aaPredicted RBP18.36■□□□□ 0.53
CCDC40-211ENST00000574099 E2F5Q15329 346 aa18.36■□□□□ 0.53
CCDC40-211ENST00000574099 ZACNQ401N2 412 aa18.36■□□□□ 0.53
CCDC40-211ENST00000574099 CNNM4Q6P4Q7 775 aa18.36■□□□□ 0.53
CCDC40-211ENST00000574099 NXPE2Q96DL1 559 aa18.36■□□□□ 0.53
CCDC40-211ENST00000574099 BTBD1Q9H0C5 482 aa18.36■□□□□ 0.53
CCDC40-211ENST00000574099 CGNQ9P2M7 1197 aaKnown RBP18.36■□□□□ 0.53
CCDC40-211ENST00000574099 SLC12A8A0AV02 714 aa18.35■□□□□ 0.53
CCDC40-211ENST00000574099 ASS1P00966 412 aaKnown RBP18.35■□□□□ 0.53
CCDC40-211ENST00000574099 HLA-DRAP01903 254 aa18.35■□□□□ 0.53
CCDC40-211ENST00000574099 NASPP49321 788 aaPredicted RBP18.35■□□□□ 0.53
CCDC40-211ENST00000574099 SEMG2Q02383 582 aa18.35■□□□□ 0.53
CCDC40-211ENST00000574099 CUL4AQ13619 759 aa18.35■□□□□ 0.53
CCDC40-211ENST00000574099 INAVAQ3KP66 663 aa18.35■□□□□ 0.53
CCDC40-211ENST00000574099 PRAMEF14Q5SWL7 426 aa18.35■□□□□ 0.53
CCDC40-211ENST00000574099 RSRC2Q7L4I2 434 aaKnown RBP18.35■□□□□ 0.53
CCDC40-211ENST00000574099 GATAD2AQ86YP4 633 aa18.35■□□□□ 0.53
CCDC40-211ENST00000574099 CPXM2Q8N436 756 aa18.35■□□□□ 0.53
CCDC40-211ENST00000574099 IQUBQ8NA54 791 aa18.35■□□□□ 0.53
CCDC40-211ENST00000574099 CDK5RAP1Q96SZ6 601 aaKnown RBP18.35■□□□□ 0.53
CCDC40-211ENST00000574099 NT5C1AQ9BXI3 368 aa18.35■□□□□ 0.53
CCDC40-211ENST00000574099 CLIC5Q9NZA1 410 aa18.35■□□□□ 0.53
CCDC40-211ENST00000574099 MARCH2Q9P0N8 246 aa18.35■□□□□ 0.53
CCDC40-211ENST00000574099 ASH1LQ9NR48 2969 aaKnown RBP18.35■□□□□ 0.53
CCDC40-211ENST00000574099 TLX3O43711 291 aaPredicted RBP18.34■□□□□ 0.53
CCDC40-211ENST00000574099 TSPAN3O60637 253 aa18.34■□□□□ 0.53
CCDC40-211ENST00000574099 RPN1P04843 607 aaKnown RBP18.34■□□□□ 0.53
CCDC40-211ENST00000574099 CD27P26842 260 aa18.34■□□□□ 0.53
CCDC40-211ENST00000574099 CTSKP43235 329 aa18.34■□□□□ 0.53
CCDC40-211ENST00000574099 RPS14P62263 151 aaKnown RBP18.34■□□□□ 0.53
CCDC40-211ENST00000574099 INCA1Q0VD86 236 aa18.34■□□□□ 0.53
CCDC40-211ENST00000574099 PPP1R26Q5T8A7 1209 aaPredicted RBP18.34■□□□□ 0.53
CCDC40-211ENST00000574099 SV2AQ7L0J3 742 aa18.34■□□□□ 0.53
CCDC40-211ENST00000574099 TMPRSS12Q86WS5 348 aa18.34■□□□□ 0.53
CCDC40-211ENST00000574099 LINC00301Q8NCQ3 95 aa18.34■□□□□ 0.53
CCDC40-211ENST00000574099 TAF4BQ92750 862 aa18.34■□□□□ 0.53
CCDC40-211ENST00000574099 ARID3AQ99856 593 aa18.34■□□□□ 0.53
CCDC40-211ENST00000574099 OSGEPQ9NPF4 335 aa18.34■□□□□ 0.53
CCDC40-211ENST00000574099 STRIP2Q9ULQ0 834 aa18.34■□□□□ 0.53
CCDC40-211ENST00000574099 USP3Q9Y6I4 520 aa18.34■□□□□ 0.53
CCDC40-211ENST00000574099 COL5A1P20908 1838 aaPredicted RBP18.34■□□□□ 0.53
CCDC40-211ENST00000574099 FLNBO75369 2602 aaKnown RBP18.34■□□□□ 0.53
CCDC40-211ENST00000574099 FAM47DPA6NHR8 397 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 E9PAM4 449 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 ATXN7O15265 892 aaPredicted RBP18.33■□□□□ 0.52
CCDC40-211ENST00000574099 SPTLC2O15270 562 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 DNTTP04053 509 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 JUPP14923 745 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 HOXD9P28356 352 aaPredicted RBP18.33■□□□□ 0.52
CCDC40-211ENST00000574099 HLA-FP30511 346 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 AFMP43652 599 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 BCAT1P54687 386 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 C21orf59P57076 290 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 DNAJC3Q13217 504 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 CUL4BQ13620 913 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 ZNF394Q53GI3 561 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 C6orf118Q5T5N4 469 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 SHC4Q6S5L8 630 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 LRRC69Q6ZNQ3 347 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 CHST9Q7L1S5 443 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 ZNF276Q8N554 614 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 GOLGA5Q8TBA6 731 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 SLC6A18Q96N87 628 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 DUSP16Q9BY84 665 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 SLC2A11Q9BYW1 496 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 TMEM245Q9H330 911 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 PRORYQ9H606 182 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 UPF2Q9HAU5 1272 aaKnown RBP18.33■□□□□ 0.52
CCDC40-211ENST00000574099 APOBEC3GQ9HC16 384 aaKnown RBP18.33■□□□□ 0.52
CCDC40-211ENST00000574099 MTMR6Q9Y217 621 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 RAI2Q9Y5P3 530 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 AK5Q9Y6K8 562 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 MYLKQ15746 1914 aa18.33■□□□□ 0.52
CCDC40-211ENST00000574099 KALRNO60229 2985 aa18.32■□□□□ 0.52
CCDC40-211ENST00000574099 ENC1O14682 589 aa18.32■□□□□ 0.52
CCDC40-211ENST00000574099 POLR2DO15514 142 aaKnown RBP18.32■□□□□ 0.52
CCDC40-211ENST00000574099 TIMM44O43615 452 aa18.32■□□□□ 0.52
CCDC40-211ENST00000574099 HNF1BP35680 557 aa18.32■□□□□ 0.52
CCDC40-211ENST00000574099 EIF2S3P41091 472 aaKnown RBP18.32■□□□□ 0.52
CCDC40-211ENST00000574099 YWHAGP61981 247 aaKnown RBP eCLIP18.32■□□□□ 0.52
CCDC40-211ENST00000574099 TTC31Q49AM3 519 aaPredicted RBP18.32■□□□□ 0.52
CCDC40-211ENST00000574099 CEP135Q66GS9 1140 aa18.32■□□□□ 0.52
CCDC40-211ENST00000574099 GRAMD1CQ8IYS0 662 aa18.32■□□□□ 0.52
CCDC40-211ENST00000574099 CNDP2Q96KP4 475 aaKnown RBP18.32■□□□□ 0.52
CCDC40-211ENST00000574099 FCRL3Q96P31 734 aaPredicted RBP18.32■□□□□ 0.52
CCDC40-211ENST00000574099 ORAI3Q9BRQ5 295 aa18.32■□□□□ 0.52
CCDC40-211ENST00000574099 ACE2Q9BYF1 805 aaPredicted RBP18.32■□□□□ 0.52
CCDC40-211ENST00000574099 PRSS16Q9NQE7 514 aa18.32■□□□□ 0.52
CCDC40-211ENST00000574099 FOXD4L1Q9NU39 408 aa18.32■□□□□ 0.52
CCDC40-211ENST00000574099 ABCB8Q9NUT2 735 aa18.32■□□□□ 0.52
CCDC40-211ENST00000574099 DMAC2Q9NW81 257 aa18.32■□□□□ 0.52
CCDC40-211ENST00000574099 PLA2G4CQ9UP65 541 aa18.32■□□□□ 0.52
CCDC40-211ENST00000574099 A0A1B0GTQ1 180 aa18.31■□□□□ 0.52
CCDC40-211ENST00000574099 RFPL3O75679 317 aa18.31■□□□□ 0.52
CCDC40-211ENST00000574099 IGHV4-34P06331 123 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms