RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 TPP1O14773 563 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 MCF2P10911 925 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 MLNP12872 115 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 SLC6A3Q01959 620 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 TRIP10Q15642 601 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 LRRC36Q1X8D7 754 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 MMEL1Q495T6 779 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 POTEAQ6S8J7 498 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 PACS1Q6VY07 963 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 DENND5BQ6ZUT9 1274 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 RAPH1Q70E73 1250 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 MPP5Q8N3R9 675 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 C20orf27Q9GZN8 174 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 STK32BQ9NY57 414 aa11.09□□□□□ -0.63
CCDC40-207ENST00000572253 WDR27A2RRH5 827 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 PROCP04070 461 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 IL4RP24394 825 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 RPS12P25398 132 aaKnown RBP11.08□□□□□ -0.64
CCDC40-207ENST00000572253 TYK2P29597 1187 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 CPOXP36551 454 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 ZNF280AP59817 542 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-207ENST00000572253 SEMA5AQ13591 1074 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 HNRNPDQ14103 355 aaKnown RBP11.08□□□□□ -0.64
CCDC40-207ENST00000572253 PDCD2Q16342 344 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-207ENST00000572253 INSCQ1MX18 579 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 RAB6CQ53S08 254 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 FOXB2Q5VYV0 432 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 KCNT2Q6UVM3 1135 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 RSPH3Q86UC2 560 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 HACE1Q8IYU2 909 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 GDPD5Q8WTR4 605 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 QKIQ96PU8 341 aaKnown RBP eCLIP11.08□□□□□ -0.64
CCDC40-207ENST00000572253 RAB6CQ9H0N0 254 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 EBF3Q9H4W6 596 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 Q9H521 79 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 ZDHHC7Q9NXF8 308 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 MOCS1Q9NZB8 636 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 CDY2AQ9Y6F7 541 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 CDY1Q9Y6F8 540 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 PHIPQ8WWQ0 1821 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 ITM2AO43736 263 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 RALBP11234 206 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 UQCRBP14927 111 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 ARL4AP40617 200 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 DEUP1Q05D60 604 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 FSTL1Q12841 308 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 GRAMD1BQ3KR37 738 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 FAM182AQ5T1J6 154 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 BSPRYQ5W0U4 402 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 CES4AQ5XG92 561 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 TRNP1Q6NT89 227 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 DPY19L2Q6NUT2 758 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 PDSS2Q86YH6 399 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 ICA1LQ8NDH6 482 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 ACTRT2Q8TDY3 377 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 PLAC1Q9HBJ0 212 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 MORF4L1Q9UBU8 362 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 BCAP29Q9UHQ4 241 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 ARHGAP26Q9UNA1 814 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 PDE5AO76074 875 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 FGF3P11487 239 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-207ENST00000572253 PGAM1P18669 254 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 SESN2P58004 480 aaPredicted RBP11.08□□□□□ -0.64
CCDC40-207ENST00000572253 MAP7Q14244 749 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 CA9Q16790 459 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 RABGAP1LQ5R372 815 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 TRIM50Q86XT4 487 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 DEFB107AQ8IZN7 70 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 HIPK4Q8NE63 616 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 TFB1MQ8WVM0 346 aaKnown RBP11.08□□□□□ -0.64
CCDC40-207ENST00000572253 GORASP1Q9BQQ3 440 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 SPATA16Q9BXB7 569 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 NDUFA13Q9P0J0 144 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 BTBD7Q9P203 1132 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 CDH22Q9UJ99 828 aa11.08□□□□□ -0.64
CCDC40-207ENST00000572253 HMX2A2RU54 273 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 HSPA4LO95757 839 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 IDH3AP50213 366 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 ABCE1P61221 599 aaKnown RBP11.07□□□□□ -0.64
CCDC40-207ENST00000572253 RPL26P61254 145 aaKnown RBP11.07□□□□□ -0.64
CCDC40-207ENST00000572253 GBE1Q04446 702 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 STEAP4Q687X5 459 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 EFCAB12Q6NXP0 572 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 NCAPG2Q86XI2 1143 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 TMEM192Q8IY95 271 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 LRRN4Q8WUT4 740 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 AFG1LQ8WV93 481 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 SERPINI1Q99574 410 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 TRIM56Q9BRZ2 755 aaKnown RBP11.07□□□□□ -0.64
CCDC40-207ENST00000572253 ZNF112Q9UJU3 913 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 COMMD3-BMI1R4GMX3 469 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 A0A0A0MRY4 1105 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 IGKV6-21A0A0C4DH24 114 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 KLHL33A6NCF5 533 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 HACD1B0YJ81 288 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 BUD23O43709 281 aaKnown RBP11.07□□□□□ -0.64
CCDC40-207ENST00000572253 DPEP1P16444 411 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 PRDX6P30041 224 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 INCA1Q0VD86 236 aa11.07□□□□□ -0.64
CCDC40-207ENST00000572253 TBL3Q12788 808 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms