RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 CCDC34Q96HJ3 373 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 GPR174Q9BXC1 333 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 OLA1Q9NTK5 396 aaKnown RBP15.61■□□□□ 0.09
CLN3-236ENST00000568558 KLK13Q9UKR3 277 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 NFE2L3Q9Y4A8 694 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 PTPRBP23467 1997 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 SPEGQ15772 3267 aa15.61■□□□□ 0.09
CLN3-236ENST00000568558 MEI4A8MW99 385 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 H0Y626 953 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 SYNCRIPO60506 623 aaKnown RBP15.6■□□□□ 0.09
CLN3-236ENST00000568558 TRIM16O95361 564 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 IGLV3-19P01714 112 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 NCAM1P13591 858 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 PRKCHP24723 683 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 HOXD9P28356 352 aaPredicted RBP15.6■□□□□ 0.09
CLN3-236ENST00000568558 TPMTP51580 245 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 ADIGQ0VDE8 80 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 GRIK2Q13002 908 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 SLC14A1Q13336 389 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 HNRNPDQ14103 355 aaKnown RBP15.6■□□□□ 0.09
CLN3-236ENST00000568558 COBLL1Q53SF7 1204 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 FMNL3Q8IVF7 1028 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 UBR7Q8N806 425 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 CADM4Q8NFZ8 388 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 SORCS1Q8WY21 1168 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 PRCCQ92733 491 aaPredicted RBP15.6■□□□□ 0.09
CLN3-236ENST00000568558 SIPA1Q96FS4 1042 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 TSG101Q99816 390 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 CIPCQ9C0C6 399 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 LRRC4Q9HBW1 653 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 RMND1Q9NWS8 449 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 HESX1Q9UBX0 185 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 MSRB2Q9Y3D2 182 aa15.6■□□□□ 0.09
CLN3-236ENST00000568558 HBS1LQ9Y450 684 aaKnown RBP15.6■□□□□ 0.09
CLN3-236ENST00000568558 PLXNB3Q9ULL4 1909 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 A0A1B0GTW7 788 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 YJEFN3A6XGL0 299 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 E7ENQ6 273 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 SH3BP5O60239 455 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 EPHX1P07099 455 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 OXTRP30559 389 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 HARS2P49590 506 aaKnown RBP15.59■□□□□ 0.09
CLN3-236ENST00000568558 YWHAEP62258 255 aaKnown RBP15.59■□□□□ 0.09
CLN3-236ENST00000568558 FKBP3Q00688 224 aaKnown RBP15.59■□□□□ 0.09
CLN3-236ENST00000568558 MPPE1Q53F39 396 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 ZNF658Q5TYW1 1059 aaPredicted RBP15.59■□□□□ 0.09
CLN3-236ENST00000568558 DCAF12L1Q5VU92 463 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 BSPRYQ5W0U4 402 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 SERPINA13PQ6UXR4 307 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 CACUL1Q86Y37 369 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 FMR1NBQ8N0W7 255 aaPredicted RBP15.59■□□□□ 0.09
CLN3-236ENST00000568558 ZCCHC9Q8N567 271 aaKnown RBP15.59■□□□□ 0.09
CLN3-236ENST00000568558 RNF139Q8WU17 664 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 ZCCHC14Q8WYQ9 949 aaKnown RBP15.59■□□□□ 0.09
CLN3-236ENST00000568558 EDEM1Q92611 657 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 SLC35C1Q96A29 364 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 IPO9Q96P70 1041 aaKnown RBP15.59■□□□□ 0.09
CLN3-236ENST00000568558 ZDHHC5Q9C0B5 715 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 SFMBT1Q9UHJ3 866 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 STOML2Q9UJZ1 356 aa15.59■□□□□ 0.09
CLN3-236ENST00000568558 RALYQ9UKM9 306 aaKnown RBP15.59■□□□□ 0.09
CLN3-236ENST00000568558 PKD1L2Q7Z442 2459 aa15.58■□□□□ 0.09
CLN3-236ENST00000568558 O00370 1275 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 TIMM44O43615 452 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 TSPAN3O60637 253 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 LATS1O95835 1130 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 SETSIPP0DME0 302 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 VDRP11473 427 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 CD19P15391 556 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 HLA-FP30511 346 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 RDXP35241 583 aaKnown RBP15.58■□□□□ 0.08
CLN3-236ENST00000568558 PMS1P54277 932 aaKnown RBP15.58■□□□□ 0.08
CLN3-236ENST00000568558 ZNF445P59923 1031 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 ARID5AQ03989 594 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 ZNF423Q2M1K9 1284 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 ANKRD40Q6AI12 368 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 SIX6OS1Q8N1H7 587 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 SCML4Q8N228 414 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 UBA3Q8TBC4 463 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 KCTD13Q8WZ19 329 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 CAMK1GQ96NX5 476 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 GSDMAQ96QA5 445 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 ABCC13Q9NSE7 274 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 PLXNA2O75051 1894 aa15.58■□□□□ 0.08
CLN3-236ENST00000568558 FAM221BA6H8Z2 402 aa15.57■□□□□ 0.08
CLN3-236ENST00000568558 TRIM49BA6NDI0 452 aa15.57■□□□□ 0.08
CLN3-236ENST00000568558 METTL12A8MUP2 240 aa15.57■□□□□ 0.08
CLN3-236ENST00000568558 MSI1O43347 362 aaKnown RBP15.57■□□□□ 0.08
CLN3-236ENST00000568558 ACADMP11310 421 aa15.57■□□□□ 0.08
CLN3-236ENST00000568558 HLA-EP13747 358 aa15.57■□□□□ 0.08
CLN3-236ENST00000568558 TBXAS1P24557 533 aaPredicted RBP15.57■□□□□ 0.08
CLN3-236ENST00000568558 DAOAP59103 153 aa15.57■□□□□ 0.08
CLN3-236ENST00000568558 LRRC63Q05C16 580 aa15.57■□□□□ 0.08
CLN3-236ENST00000568558 LRMPQ12912 555 aa15.57■□□□□ 0.08
CLN3-236ENST00000568558 CAMK2GQ13555 558 aaPredicted RBP15.57■□□□□ 0.08
CLN3-236ENST00000568558 TRIP6Q15654 476 aaKnown RBP15.57■□□□□ 0.08
CLN3-236ENST00000568558 PKDCCQ504Y2 493 aa15.57■□□□□ 0.08
CLN3-236ENST00000568558 ADGRF1Q5T601 910 aa15.57■□□□□ 0.08
CLN3-236ENST00000568558 RAB44Q7Z6P3 723 aaPredicted RBP15.57■□□□□ 0.08
CLN3-236ENST00000568558 NAXDQ8IW45 347 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms