RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 TRIM62Q9BVG3 475 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 CRISPLD1Q9H336 500 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 LRRC4CQ9HCJ2 640 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 RAB6BQ9NRW1 208 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 DTLQ9NZJ0 730 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 SEPT10Q9P0V9 454 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 OR12D3Q9UGF7 316 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 NFS1Q9Y697 457 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 MYO16Q9Y6X6 1858 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 TRIM43BA6NCK2 446 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 MFSD11O43934 449 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 CSPG5O95196 566 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 HSPA8P11142 646 aaKnown RBP7.31□□□□□ -1.24
SMG1-215ENST00000568239 ERCC2P18074 760 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 DNAJB2P25686 324 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 YWHAQP27348 245 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 LMAN1P49257 510 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 ATP1A2P50993 1020 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 GAD2Q05329 585 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 PDIA2Q13087 525 aaKnown RBP7.31□□□□□ -1.24
SMG1-215ENST00000568239 GPR17Q13304 367 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 MRPL58Q14197 206 aaKnown RBP7.31□□□□□ -1.24
SMG1-215ENST00000568239 MORF4L2Q15014 288 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 USP41Q3LFD5 358 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 RNASEH2BQ5TBB1 312 aaKnown RBP7.31□□□□□ -1.24
SMG1-215ENST00000568239 LRIG3Q6UXM1 1119 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 TRMT10CQ7L0Y3 403 aaKnown RBP7.31□□□□□ -1.24
SMG1-215ENST00000568239 BNIPLQ7Z465 357 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 PCGF5Q86SE9 256 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 SCD5Q86SK9 330 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 VSIG1Q86XK7 387 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 PSTKQ8IV42 348 aaKnown RBP7.31□□□□□ -1.24
SMG1-215ENST00000568239 PPIL6Q8IXY8 311 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 ZBED8Q8IZ13 594 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 FBXO22Q8NEZ5 403 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 CPT1BQ92523 772 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 CASP10Q92851 521 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 TRIM43Q96BQ3 446 aaPredicted RBP7.31□□□□□ -1.24
SMG1-215ENST00000568239 ARMC5Q96C12 935 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 SLC9A7Q96T83 725 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 EPAS1Q99814 870 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 EPB41L4BQ9H329 900 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 FBXO44Q9H4M3 255 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 GMIPQ9P107 970 aa7.31□□□□□ -1.24
SMG1-215ENST00000568239 XPO7Q9UIA9 1087 aaKnown RBP7.31□□□□□ -1.24
SMG1-215ENST00000568239 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.31□□□□□ -1.24
SMG1-215ENST00000568239 TCRBV7S3A2A0A539 114 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 ADAM12O43184 909 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 BANF1O75531 89 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 TIMP1P01033 207 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 APRTP07741 180 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 MAGEA4P43358 317 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 NR2C2P49116 596 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 EIF3BP55884 814 aaKnown RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 PSMD5Q16401 504 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 MON1AQ86VX9 555 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 MIB1Q86YT6 1006 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 ANKMY2Q8IV38 441 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 CDKL3Q8IVW4 592 aaPredicted RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 TP53INP2Q8IXH6 220 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 ZCCHC9Q8N567 271 aaKnown RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 SPPL2BQ8TCT7 592 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 EPS8L3Q8TE67 593 aaKnown RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 TFB1MQ8WVM0 346 aaKnown RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 TOP1MTQ969P6 601 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 NTAN1Q96AB6 310 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 PGAP3Q96FM1 320 aaPredicted RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 IGSF21Q96ID5 467 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 C8orf48Q96LL4 319 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 YME1L1Q96TA2 773 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 CEP41Q9BYV8 373 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 USP29Q9HBJ7 922 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 OSER1Q9NX31 292 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 RCOR3Q9P2K3 495 aaPredicted RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 NOVA2Q9UNW9 492 aaKnown RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 ABHD14A-ACY1A0A1B0GW23 586 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 CFAP69A5D8W1 941 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 LRIG2O94898 1065 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 TTC4O95801 387 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 TBX18O95935 607 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 HMBSP08397 361 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 CCR1P32246 355 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 CXCR3P49682 368 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 EFEMP1Q12805 493 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 TAF10Q12962 218 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 FASTKD3Q14CZ7 662 aaKnown RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 TERF2Q15554 542 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 HIF1AQ16665 826 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 LONRF1Q17RB8 773 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 SLC45A4Q5BKX6 768 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 SPDYCQ5MJ68 293 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 TTC19Q6DKK2 380 aaPredicted RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 CENPUQ71F23 418 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 BZW1Q7L1Q6 419 aaKnown RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 HOOK3Q86VS8 718 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 TMEM199Q8N511 208 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 ANKLE1Q8NAG6 615 aa7.3□□□□□ -1.24
SMG1-215ENST00000568239 PRCCQ92733 491 aaPredicted RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 MRRFQ96E11 262 aaKnown RBP7.3□□□□□ -1.24
SMG1-215ENST00000568239 ATP6V1G3Q96LB4 118 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms