RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CCINQ13939 588 aa17.99■□□□□ 0.47
CLN3-217ENST00000565354 CLEC16AQ2KHT3 1053 aa17.99■□□□□ 0.47
CLN3-217ENST00000565354 VPS36Q86VN1 386 aa17.99■□□□□ 0.47
CLN3-217ENST00000565354 SYNPOQ8N3V7 929 aa17.99■□□□□ 0.47
CLN3-217ENST00000565354 OSCP1Q8WVF1 389 aa17.99■□□□□ 0.47
CLN3-217ENST00000565354 SYN2Q92777 582 aaPredicted RBP17.99■□□□□ 0.47
CLN3-217ENST00000565354 KLF16Q9BXK1 252 aaPredicted RBP17.99■□□□□ 0.47
CLN3-217ENST00000565354 POPDC2Q9HBU9 364 aa17.99■□□□□ 0.47
CLN3-217ENST00000565354 ZNHIT6Q9NWK9 470 aaKnown RBP17.99■□□□□ 0.47
CLN3-217ENST00000565354 TBC1D14Q9P2M4 693 aa17.99■□□□□ 0.47
CLN3-217ENST00000565354 SFMBT1Q9UHJ3 866 aa17.99■□□□□ 0.47
CLN3-217ENST00000565354 BZW2Q9Y6E2 419 aaKnown RBP17.99■□□□□ 0.47
CLN3-217ENST00000565354 E2F8A0AVK6 867 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 GOLGA8SH3BPF8 625 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 SCAMP3O14828 347 aaKnown RBP17.98■□□□□ 0.47
CLN3-217ENST00000565354 HSF2BPO75031 334 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 GRAP2O75791 330 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 GLI1P08151 1106 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 SKILP12757 684 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 PRKCIP41743 596 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 ZXDBP98169 803 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 PON2Q15165 354 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 CCDC6Q16204 474 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 FAM102AQ5T9C2 384 aaPredicted RBP17.98■□□□□ 0.47
CLN3-217ENST00000565354 TRIM68Q6AZZ1 485 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 PPP1R2P3Q6NXS1 205 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 MMS22LQ6ZRQ5 1243 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 CPA6Q8N4T0 437 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 SLC30A5Q8TAD4 765 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 TTC8Q8TAM2 541 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 RIN3Q8TB24 985 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 ATP2A3Q93084 1043 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 ZFRQ96KR1 1074 aaKnown RBP17.98■□□□□ 0.47
CLN3-217ENST00000565354 PCDHB18PQ96TA0 734 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 C11orf70Q9BRQ4 267 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.98■□□□□ 0.47
CLN3-217ENST00000565354 EBF3Q9H4W6 596 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 RXFP3Q9NSD7 469 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 ASNSD1Q9NWL6 643 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 ADAM22Q9P0K1 906 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 ASPMQ8IZT6 3477 aa17.98■□□□□ 0.47
CLN3-217ENST00000565354 AP5Z1O43299 807 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 EPN2O95208 641 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 NFATC1O95644 943 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 SERPING1P05155 500 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 CALB1P05937 261 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 GABRB2P47870 512 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 ZNF75DP51815 510 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 RNASE9P60153 205 aaKnown RBP17.97■□□□□ 0.47
CLN3-217ENST00000565354 CENPCQ03188 943 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 NR1H3Q13133 447 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 RUNX3Q13761 415 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 ITPRIPL2Q3MIP1 535 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 C2CD6Q53TS8 623 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 STPG1Q5TH74 334 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 E4F1Q66K89 784 aaPredicted RBP17.97■□□□□ 0.47
CLN3-217ENST00000565354 OLFML1Q6UWY5 402 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 KIAA1958Q8N8K9 716 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 GAB3Q8WWW8 586 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 PLD4Q96BZ4 506 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 DCLK3Q9C098 648 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 GTSE1Q9NYZ3 720 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 NAALADL1Q9UQQ1 740 aa17.97■□□□□ 0.47
CLN3-217ENST00000565354 HBS1LQ9Y450 684 aaKnown RBP17.97■□□□□ 0.47
CLN3-217ENST00000565354 TMCO5BA8MYB1 307 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 DAB1O75553 588 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 RPP40O75818 363 aaKnown RBP17.96■□□□□ 0.47
CLN3-217ENST00000565354 PROS1P07225 676 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 UNGP13051 313 aaPredicted RBP17.96■□□□□ 0.47
CLN3-217ENST00000565354 ARSAP15289 507 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 HARS2P49590 506 aaKnown RBP17.96■□□□□ 0.47
CLN3-217ENST00000565354 CDK17Q00537 523 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 TNK2Q07912 1038 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 TAF5Q15542 800 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 DCAF6Q58WW2 860 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 MSANTD2Q6P1R3 559 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 BEND5Q7L4P6 421 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 SLC26A9Q7LBE3 791 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 ZNF571Q7Z3V5 609 aaPredicted RBP17.96■□□□□ 0.47
CLN3-217ENST00000565354 KBTBD6Q86V97 674 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 XYLT1Q86Y38 959 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 DEFB106AQ8N104 65 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 PIWIL1Q96J94 861 aaKnown RBP17.96■□□□□ 0.47
CLN3-217ENST00000565354 SERPINB11Q96P15 392 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 FAM83CQ9BQN1 747 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 FAM204AQ9H8W3 233 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 WDR35Q9P2L0 1181 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 ZNF510Q9Y2H8 683 aa17.96■□□□□ 0.47
CLN3-217ENST00000565354 CCDC163A0A0D9SF12 145 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 MSI1O43347 362 aaKnown RBP17.95■□□□□ 0.46
CLN3-217ENST00000565354 STC2O76061 302 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 KCNK5O95279 499 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 MMP8P22894 467 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 CORO1AP31146 461 aaKnown RBP17.95■□□□□ 0.46
CLN3-217ENST00000565354 GBP1P32455 592 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 TBX4P57082 545 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 AMPD2Q01433 879 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 EML3Q32P44 896 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 PLA2G2CQ5R387 149 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 ACAD10Q6JQN1 1059 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms