RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 FCRL2Q96LA5 508 aaPredicted RBP15.5■□□□□ 0.07
CLN3-213ENST00000565047 MRGPRX1Q96LB2 322 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 FAM81BQ96LP2 452 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 MIS12Q9H081 205 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 TMEM74BQ9NUR3 256 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 ELOVL2Q9NXB9 296 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 TJP2Q9UDY2 1190 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 NAALADL1Q9UQQ1 740 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 RAD54BQ9Y620 910 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 STON1Q9Y6Q2 735 aa15.5■□□□□ 0.07
CLN3-213ENST00000565047 IGHV1OR15-9A0A0B4J2B8 117 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 GOLGA6L7A0A1B0GV03 622 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 NPC1O15118 1278 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 IGLV3-25P01717 112 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 GNA15P30679 374 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 SLC6A4P31645 630 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 ACADSBP45954 432 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 ZNF445P59923 1031 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 KCNMA1Q12791 1236 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 NNTQ13423 1086 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 MAN2A1Q16706 1144 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 MPPE1Q53F39 396 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 MPP7Q5T2T1 576 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 PIK3R6Q5UE93 754 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 ADIPOR2Q86V24 386 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 DDI1Q8WTU0 396 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 IRX2Q9BZI1 471 aaPredicted RBP15.49■□□□□ 0.07
CLN3-213ENST00000565047 SLC6A17Q9H1V8 727 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 CD93Q9NPY3 652 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 PCDHGC3Q9UN70 934 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 NCOR2Q9Y618 2525 aa15.49■□□□□ 0.07
CLN3-213ENST00000565047 NUP205Q92621 2012 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 THADAQ6YHU6 1953 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 PATE3B3GLJ2 98 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 E5RJQ4 531 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 FOXN3O00409 490 aaPredicted RBP15.48■□□□□ 0.07
CLN3-213ENST00000565047 TSPAN3O60637 253 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 CYBBP04839 570 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 NCAM1P13591 858 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 CLCN1P35523 988 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 ZNF234Q14588 700 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 EIF4HQ15056 248 aaKnown RBP15.48■□□□□ 0.07
CLN3-213ENST00000565047 TAF5Q15542 800 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 FUT11Q495W5 492 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 AASDHQ4L235 1098 aaPredicted RBP15.48■□□□□ 0.07
CLN3-213ENST00000565047 STPG1Q5TH74 334 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 ANKS1BQ7Z6G8 1248 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 METTL3Q86U44 580 aaKnown RBP15.48■□□□□ 0.07
CLN3-213ENST00000565047 TMEFF1Q8IYR6 380 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 WFDC5Q8TCV5 224 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 SORCS1Q8WY21 1168 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 TMA16Q96EY4 203 aaKnown RBP15.48■□□□□ 0.07
CLN3-213ENST00000565047 MKRN2Q9H000 416 aaKnown RBP15.48■□□□□ 0.07
CLN3-213ENST00000565047 NUP62CLQ9H1M0 184 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 NDST4Q9H3R1 872 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 BCCIPQ9P287 314 aaKnown RBP eCLIP15.48■□□□□ 0.07
CLN3-213ENST00000565047 TLR6Q9Y2C9 796 aa15.48■□□□□ 0.07
CLN3-213ENST00000565047 MUC22E2RYF6 1773 aaPredicted RBP15.47■□□□□ 0.07
CLN3-213ENST00000565047 LNP1A1A4G5 178 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 CDX4O14627 284 aaPredicted RBP15.47■□□□□ 0.07
CLN3-213ENST00000565047 THAP12O43422 761 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 MED7O43513 233 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 TIMM44O43615 452 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 ACSL4O60488 711 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 MTIF2P46199 727 aaKnown RBP15.47■□□□□ 0.07
CLN3-213ENST00000565047 COPAP53621 1224 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 TBX4P57082 545 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 PITX1P78337 314 aaPredicted RBP15.47■□□□□ 0.07
CLN3-213ENST00000565047 PDCLQ13371 301 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 BYSLQ13895 437 aaKnown RBP15.47■□□□□ 0.07
CLN3-213ENST00000565047 ARHGAP44Q17R89 818 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 VWA3BQ502W6 1294 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 CT47A1Q5JQC4 288 aaPredicted RBP15.47■□□□□ 0.07
CLN3-213ENST00000565047 NUGGCQ68CJ6 796 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 SDE2Q6IQ49 451 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 RFWD3Q6PCD5 774 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 RBM43Q6ZSC3 357 aaKnown RBP15.47■□□□□ 0.07
CLN3-213ENST00000565047 LPCAT2Q7L5N7 544 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 TAC4Q86UU9 113 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 CREBRFQ8IUR6 639 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 UNC45BQ8IWX7 931 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 FAM71AQ8IYT1 594 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 PGBD3Q8N328 593 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 C12orf50Q8NA57 414 aaPredicted RBP15.47■□□□□ 0.07
CLN3-213ENST00000565047 GPT2Q8TD30 523 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 ERLEC1Q96DZ1 483 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 SPACA7Q96KW9 195 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 PRICKLE1Q96MT3 831 aaPredicted RBP15.47■□□□□ 0.07
CLN3-213ENST00000565047 CPXM1Q96SM3 734 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 TUBGCP2Q9BSJ2 902 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 NAA15Q9BXJ9 866 aaKnown RBP15.47■□□□□ 0.07
CLN3-213ENST00000565047 LHX5Q9H2C1 402 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 TMEM245Q9H330 911 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 SAMSN1Q9NSI8 373 aaKnown RBP15.47■□□□□ 0.07
CLN3-213ENST00000565047 EVLQ9UI08 416 aaPredicted RBP15.47■□□□□ 0.07
CLN3-213ENST00000565047 PILRBQ9UKJ0 227 aa15.47■□□□□ 0.07
CLN3-213ENST00000565047 IRAK2O43187 625 aa15.46■□□□□ 0.07
CLN3-213ENST00000565047 SART1O43290 800 aaKnown RBP15.46■□□□□ 0.07
CLN3-213ENST00000565047 PNMA6AP0CW24 399 aaPredicted RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms