RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 RAB6CQ9H0N0 254 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 SMG9Q9H0W8 520 aaKnown RBP21.42■■□□□ 1.02
CLN3-212ENST00000564574 ZFP14Q9HCL3 533 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 CFAP97Q9P2B7 532 aa21.42■■□□□ 1.02
CLN3-212ENST00000564574 IRF1P10914 325 aa21.41■■□□□ 1.02
CLN3-212ENST00000564574 SSR1P43307 286 aaKnown RBP21.41■■□□□ 1.02
CLN3-212ENST00000564574 SLC25A11Q02978 314 aaKnown RBP21.41■■□□□ 1.02
CLN3-212ENST00000564574 SCAPQ12770 1279 aa21.41■■□□□ 1.02
CLN3-212ENST00000564574 BOLA3Q53S33 107 aa21.41■■□□□ 1.02
CLN3-212ENST00000564574 LRRC38Q5VT99 294 aa21.41■■□□□ 1.02
CLN3-212ENST00000564574 HTR3DQ70Z44 454 aa21.41■■□□□ 1.02
CLN3-212ENST00000564574 POLNQ7Z5Q5 900 aa21.41■■□□□ 1.02
CLN3-212ENST00000564574 PSTKQ8IV42 348 aaKnown RBP21.41■■□□□ 1.02
CLN3-212ENST00000564574 TKTL2Q9H0I9 626 aa21.41■■□□□ 1.02
CLN3-212ENST00000564574 AMFRQ9UKV5 643 aa21.41■■□□□ 1.02
CLN3-212ENST00000564574 CCL26Q9Y258 94 aa21.41■■□□□ 1.02
CLN3-212ENST00000564574 CUL9Q8IWT3 2517 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 EYSQ5T1H1 3165 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 GREM1O60565 184 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 KRT7P08729 469 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 FCARP24071 287 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 CORO1AP31146 461 aaKnown RBP21.4■■□□□ 1.02
CLN3-212ENST00000564574 ADRA1BP35368 520 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 SLC11A2P49281 568 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 ERMARDQ5T6L9 678 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 Q6ZNB5 142 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 PEX26Q7Z412 305 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 NT5DC3Q86UY8 548 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 RHOT1Q8IXI2 618 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 TEKT4Q8WW24 435 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 ELSPBP1Q96BH3 223 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 HAPLN3Q96S86 360 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 PRDM6Q9NQX0 595 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 PCSK1NQ9UHG2 260 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 FZD10Q9ULW2 581 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 REV3LO60673 3130 aa21.4■■□□□ 1.02
CLN3-212ENST00000564574 MIF4GDA9UHW6 222 aaKnown RBP21.39■■□□□ 1.01
CLN3-212ENST00000564574 PSTPIP1O43586 416 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 ACSL4O60488 711 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 ECI2O75521 394 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 TAS2R40P59535 323 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 TFF2Q03403 129 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 EFHC2Q5JST6 749 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 DAB2IPQ5VWQ8 1189 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 ZSCAN30Q86W11 494 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 CPNE8Q86YQ8 564 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 ZDHHC14Q8IZN3 488 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 CCDC185Q8N715 623 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 BPIFB1Q8TDL5 484 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 OTUB2Q96DC9 234 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 PEBP4Q96S96 227 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 DDX50Q9BQ39 737 aaKnown RBP21.39■■□□□ 1.01
CLN3-212ENST00000564574 GOLPH3Q9H4A6 298 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 TBC1D14Q9P2M4 693 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 STOML2Q9UJZ1 356 aa21.39■■□□□ 1.01
CLN3-212ENST00000564574 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.39■■□□□ 1.01
CLN3-212ENST00000564574 HEPACAM2A8MVW5 462 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 C2CD4DB7Z1M9 353 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 ANHXE9PGG2 379 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 SLC9A3R1O14745 358 aaPredicted RBP21.38■■□□□ 1.01
CLN3-212ENST00000564574 MOCS2O96007 188 aaPredicted RBP21.38■■□□□ 1.01
CLN3-212ENST00000564574 CTNNA2P26232 953 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 IL1R2P27930 398 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 VIPR2P41587 438 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 TANGO2Q6ICL3 276 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 CYP4V2Q6ZWL3 525 aaPredicted RBP21.38■■□□□ 1.01
CLN3-212ENST00000564574 DENND1CQ8IV53 801 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 C17orf53Q8N3J3 647 aaPredicted RBP21.38■■□□□ 1.01
CLN3-212ENST00000564574 DEPDC1BQ8WUY9 529 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 CD101Q93033 1021 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 WBP2Q969T9 261 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 NXPE3Q969Y0 559 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 C1orf74Q96LT6 269 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 SNRNP25Q9BV90 132 aaKnown RBP21.38■■□□□ 1.01
CLN3-212ENST00000564574 IRX2Q9BZI1 471 aaPredicted RBP21.38■■□□□ 1.01
CLN3-212ENST00000564574 OSBPL2Q9H1P3 480 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 THG1LQ9NWX6 298 aaKnown RBP21.38■■□□□ 1.01
CLN3-212ENST00000564574 DDX56Q9NY93 547 aaKnown RBP21.38■■□□□ 1.01
CLN3-212ENST00000564574 AGO1Q9UL18 857 aaKnown RBP21.38■■□□□ 1.01
CLN3-212ENST00000564574 AP4E1Q9UPM8 1137 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 HYOU1Q9Y4L1 999 aa21.38■■□□□ 1.01
CLN3-212ENST00000564574 CCDC66A2RUB6 948 aa21.37■■□□□ 1.01
CLN3-212ENST00000564574 PAGE1O75459 146 aa21.37■■□□□ 1.01
CLN3-212ENST00000564574 KLKB1P03952 638 aa21.37■■□□□ 1.01
CLN3-212ENST00000564574 IL9P15248 144 aa21.37■■□□□ 1.01
CLN3-212ENST00000564574 TCF4P15884 667 aa21.37■■□□□ 1.01
CLN3-212ENST00000564574 CTNNA1P35221 906 aaKnown RBP21.37■■□□□ 1.01
CLN3-212ENST00000564574 NRG1Q02297 640 aaPredicted RBP21.37■■□□□ 1.01
CLN3-212ENST00000564574 ZNF569Q5MCW4 686 aa21.37■■□□□ 1.01
CLN3-212ENST00000564574 MFSD6LQ8IWD5 586 aa21.37■■□□□ 1.01
CLN3-212ENST00000564574 FAM217AQ8IXS0 508 aa21.37■■□□□ 1.01
CLN3-212ENST00000564574 RSPRY1Q96DX4 576 aa21.37■■□□□ 1.01
CLN3-212ENST00000564574 ZWILCHQ9H900 591 aa21.37■■□□□ 1.01
CLN3-212ENST00000564574 PRKAG3Q9UGI9 489 aa21.37■■□□□ 1.01
CLN3-212ENST00000564574 FTCDO95954 541 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 RARAP10276 462 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 CHKAP35790 457 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 ZNF135P52742 658 aaPredicted RBP21.36■■□□□ 1.01
CLN3-212ENST00000564574 MLLT6P55198 1093 aaPredicted RBP21.36■■□□□ 1.01
CLN3-212ENST00000564574 HTR4Q13639 388 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms