RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 TTC7BQ86TV6 843 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 CCNYL1Q8N7R7 359 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 LPCAT1Q8NF37 534 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 SNF8Q96H20 258 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 FGD4Q96M96 766 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 UBXN6Q9BZV1 441 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 RRN3Q9NYV6 651 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 CRLS1Q9UJA2 301 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 NEU2Q9Y3R4 380 aa9.53□□□□□ -0.88
VPS39-205ENST00000562258 SIPA1L3O60292 1781 aaPredicted RBP9.52□□□□□ -0.88
VPS39-205ENST00000562258 COL4A5P29400 1685 aa9.52□□□□□ -0.88
VPS39-205ENST00000562258 NDUFAB1O14561 156 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 MGEA5O60502 916 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 PIRTP0C851 137 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 CORO1AP31146 461 aaKnown RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 MATKP42679 507 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 MARCKSL1P49006 195 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 KDSRQ06136 332 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 MAP3K21Q5TCX8 1036 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 FRA10AC1Q70Z53 315 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 JAMLQ86YT9 394 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 PTPRN2Q92932 1015 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 THOC1Q96FV9 657 aaKnown RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 TMEM209Q96SK2 561 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 SMG9Q9H0W8 520 aaKnown RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 OSGEPL1Q9H4B0 414 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 SCUBE2Q9NQ36 999 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 MAN1C1Q9NR34 630 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 PAK5Q9P286 719 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 DEC1Q9P2X7 70 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 SIX4Q9UIU6 781 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 PKP3Q9Y446 797 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 SNX10Q9Y5X0 201 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 CASP8AP2Q9UKL3 1982 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 MYO5AQ9Y4I1 1855 aaKnown RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 RBM47A0AV96 593 aaKnown RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 RAD51CO43502 376 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 EDIL3O43854 480 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 ITGB1P05556 798 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 ERCC2P18074 760 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 ARHGAP25P42331 645 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 ATXN1P54253 815 aaKnown RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 POU6F1Q14863 301 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 CCDC38Q502W7 563 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 C2orf27AQ580R0 203 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 CRELD2Q6UXH1 353 aaPredicted RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 TTC17Q96AE7 1141 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 TIFAQ96CG3 184 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 CALR3Q96L12 384 aaKnown RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 RMDN2Q96LZ7 410 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 RGS18Q9NS28 235 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 C20orf96Q9NUD7 363 aaPredicted RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 YIPF1Q9Y548 306 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 APC2O95996 2303 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 NBNO60934 754 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 PHF2O75151 1096 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 GPC4O75487 556 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 SERPINF2P08697 491 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 CHRM3P20309 590 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 PSEN1P49768 467 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 ATXN3P54252 364 aaPredicted RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 UBXN2BQ14CS0 331 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 FAM187BQ17R55 369 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 HABP4Q5JVS0 413 aaKnown RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 NPNTQ6UXI9 565 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 ADCK2Q7Z695 626 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 CIR1Q86X95 450 aaPredicted RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 FAM126BQ8IXS8 530 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 PPHLN1Q8NEY8 458 aaKnown RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 DQX1Q8TE96 717 aaKnown RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 GDPD5Q8WTR4 605 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 SUSD3Q96L08 255 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 SLC9A7Q96T83 725 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 KLF6Q99612 283 aaPredicted RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 TRIM56Q9BRZ2 755 aaKnown RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 C2orf49Q9BVC5 232 aaPredicted RBP9.52□□□□□ -0.89
VPS39-205ENST00000562258 ZDHHC6Q9H6R6 413 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 ZFP14Q9HCL3 533 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 RPS6KL1Q9Y6S9 549 aa9.52□□□□□ -0.89
VPS39-205ENST00000562258 IGKV6-21A0A0C4DH24 114 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 RCCD1A6NED2 376 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 PSTPIP1O43586 416 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 PAGE1O75459 146 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 NOL4O94818 638 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 PRKCIP41743 596 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 FAAP100Q0VG06 881 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 TAF1BQ53T94 588 aaPredicted RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 PTRHD1Q6GMV3 140 aaKnown RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 OSTM1Q86WC4 334 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 ZNF461Q8TAF7 563 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 RPL10LQ96L21 214 aaKnown RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 KLHL5Q96PQ7 755 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 C17orf80Q9BSJ5 609 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 MORC2Q9Y6X9 1032 aaPredicted RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 LRP5O75197 1615 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 MYH11P35749 1972 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 MBLAC1A4D2B0 266 aaPredicted RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 CFAP69A5D8W1 941 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 PPP1R37O75864 691 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 CFHP08603 1231 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms