RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 ABHD2P08910 425 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 HSPA8P11142 646 aaKnown RBP13.35□□□□□ -0.27
SNX1-211ENST00000560829 CPB1P15086 417 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 ACTN2P35609 894 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 MAGEA4P43358 317 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 MAGEA6P43360 314 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 KYNUQ16719 465 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 FAM72AQ5TYM5 149 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 FAM72DQ6L9T8 149 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 MSANTD2Q6P1R3 559 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 TAS1R1Q7RTX1 841 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 FAM72BQ86X60 149 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 DNAJC5GQ8N7S2 189 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 PGLYRP2Q96PD5 576 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 NMUR1Q9HB89 426 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 MTRRQ9UBK8 725 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 BACE2Q9Y5Z0 518 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 TET1Q8NFU7 2136 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 PTPRDP23468 1912 aa13.35□□□□□ -0.27
SNX1-211ENST00000560829 COL4A6Q14031 1691 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 C5orf60A6NFR6 353 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 E7ESA3 106 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 CHADO15335 359 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 MFSD11O43934 449 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 EFCAB14O75071 495 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 UPP2O95045 317 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 RTN3O95197 1032 aaPredicted RBP13.34□□□□□ -0.27
SNX1-211ENST00000560829 HAPLN1P10915 354 aaPredicted RBP13.34□□□□□ -0.27
SNX1-211ENST00000560829 GPR15P49685 360 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 PGFP49763 221 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 NRLP54845 237 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 KCNJ11Q14654 390 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 USP41Q3LFD5 358 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 ANKRD22Q5VYY1 191 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 KCTD16Q68DU8 428 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 DENND5BQ6ZUT9 1274 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 CENPUQ71F23 418 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 B4GALNT4Q76KP1 1039 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 TTC9BQ8N6N2 239 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 IGSF21Q96ID5 467 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 CEP295NLQ96MC4 621 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 TTC25Q96NG3 672 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 HAPLN3Q96S86 360 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 EPAS1Q99814 870 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 DNAJC17Q9NVM6 304 aaKnown RBP13.34□□□□□ -0.27
SNX1-211ENST00000560829 MFHAS1Q9Y4C4 1052 aa13.34□□□□□ -0.27
SNX1-211ENST00000560829 A0A1W2PQH9 124 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 TMEM63AO94886 807 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 MAP3K6O95382 1288 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 ACSL3O95573 720 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 ERCC2P18074 760 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 HTR7P34969 479 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 TPI1P60174 286 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 USP46P62068 366 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 SKOR1P84550 965 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 PPP2R5DQ14738 602 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 PDK1Q15118 436 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 PRKD1Q15139 912 aaPredicted RBP13.33□□□□□ -0.27
SNX1-211ENST00000560829 HIF1AQ16665 826 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 C6orf118Q5T5N4 469 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 MFSD5Q6N075 450 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 RNF19BQ6ZMZ0 732 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 PDZD4Q76G19 769 aaPredicted RBP13.33□□□□□ -0.27
SNX1-211ENST00000560829 SH2D3CQ8N5H7 860 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 TFB1MQ8WVM0 346 aaKnown RBP13.33□□□□□ -0.27
SNX1-211ENST00000560829 CASP10Q92851 521 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 TLCD1Q96CP7 247 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 SERPINB11Q96P15 392 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 FRMD8Q9BZ67 464 aaPredicted RBP13.33□□□□□ -0.27
SNX1-211ENST00000560829 CRISPLD1Q9H336 500 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 LRRC4CQ9HCJ2 640 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 SAYSD1Q9NPB0 183 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 OSER1Q9NX31 292 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 CLIC5Q9NZA1 410 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 OR12D3Q9UGF7 316 aa13.33□□□□□ -0.27
SNX1-211ENST00000560829 SCN5AQ14524 2016 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 CARNS1A5YM72 827 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 TRIM43BA6NCK2 446 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 ITGB8P26012 769 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 CCR1P32246 355 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 GLUD2P49448 558 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 PSEN1P49768 467 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 ARL4CP56559 192 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 BASP1P80723 227 aaKnown RBP13.33□□□□□ -0.28
SNX1-211ENST00000560829 IFRD2Q12894 506 aaPredicted RBP13.33□□□□□ -0.28
SNX1-211ENST00000560829 TNFAIP8L3Q5GJ75 292 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 SDHAF4Q5VUM1 108 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 KDM7AQ6ZMT4 941 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 FBXO22Q8NEZ5 403 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 HTR3CQ8WXA8 447 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 TRIM43Q96BQ3 446 aaPredicted RBP13.33□□□□□ -0.28
SNX1-211ENST00000560829 VN1R3Q9BXE9 311 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 RAB6BQ9NRW1 208 aa13.33□□□□□ -0.28
SNX1-211ENST00000560829 TCRBV7S3A2A0A539 114 aa13.32□□□□□ -0.28
SNX1-211ENST00000560829 PPP1R12AO14974 1030 aaPredicted RBP13.32□□□□□ -0.28
SNX1-211ENST00000560829 NCAM2O15394 837 aa13.32□□□□□ -0.28
SNX1-211ENST00000560829 LRIG2O94898 1065 aa13.32□□□□□ -0.28
SNX1-211ENST00000560829 VAV1P15498 845 aa13.32□□□□□ -0.28
SNX1-211ENST00000560829 YWHAQP27348 245 aa13.32□□□□□ -0.28
SNX1-211ENST00000560829 HOXC13P31276 330 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms