RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 NOCTQ9UK39 431 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 SHOC2Q9UQ13 582 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 CHMP2BQ9UQN3 213 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 DERAQ9Y315 318 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 COQ4Q9Y3A0 265 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 FIS1Q9Y3D6 152 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 ASXL3Q9C0F0 2248 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 GOLGA6L7A0A1B0GV03 622 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 TCRBV7S2A1N4TA0A589 114 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 GOLGA8RI6L899 631 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 KPNA3O00505 521 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 PIRO00625 290 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 PPP1R12AO14974 1030 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 XPO1O14980 1071 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 RAMP2O60895 175 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 RTN3O95197 1032 aaPredicted RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 ASMTLO95671 621 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 CORO1AP31146 461 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 CARSP49589 748 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 CACNA2D1P54289 1103 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 KDSRQ06136 332 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 GRM2Q14416 872 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 TMED2Q15363 201 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 TAS2R42Q7RTR8 314 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 XYLT1Q86Y38 959 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 CCDC185Q8N715 623 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 COLGALT1Q8NBJ5 622 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 OR2W6PQ8NHA6 318 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 HDAC7Q8WUI4 952 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 TOP1MTQ969P6 601 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 BORCS6Q96GS4 357 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 UNKQ9C0B0 810 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 TTYH3Q9C0H2 523 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 RBM22Q9NW64 420 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 AFF4Q9UHB7 1163 aaKnown RBP5.63□□□□□ -1.51
VPS13C-209ENST00000560637 STYXL1Q9Y6J8 313 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 PSME4Q14997 1843 aa5.63□□□□□ -1.51
VPS13C-209ENST00000560637 TRAV19A0A0A6YYK7 116 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 ANO9A1A5B4 782 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 WDR27A2RRH5 827 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 SIGLEC16A6NMB1 481 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 B4GALT3O60512 393 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 PAGE1O75459 146 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 F9P00740 461 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 ERCC2P18074 760 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 GTF2F1P35269 517 aaKnown RBP eCLIP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 EPHB4P54760 987 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 VSNL1P62760 191 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 CRADDP78560 199 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 CA9Q16790 459 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 LRRC73Q5JTD7 316 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 NT5DC3Q86UY8 548 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 FAM124AQ86V42 546 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 MON1AQ86VX9 555 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 COLGALT2Q8IYK4 626 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 ARHGAP18Q8N392 663 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 TDRD5Q8NAT2 981 aaKnown RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 LMO3Q8TAP4 145 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 LINC01599Q8WXQ3 324 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 SCYL1Q96KG9 808 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 PWWP2AQ96N64 755 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 KLF6Q99612 283 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 CATSPERBQ9H7T0 1116 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 XPO7Q9UIA9 1087 aaKnown RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 DNMT3LQ9UJW3 386 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 DNPEPQ9ULA0 475 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 PLA2G4CQ9UP65 541 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 FARP1Q9Y4F1 1045 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 MRFAP1Q9Y605 127 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 WNT6Q9Y6F9 365 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 BRCA2P51587 3418 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 KNTC1P50748 2209 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 LAMB1P07942 1786 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 DOCK1Q14185 1865 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 TTC24A2A3L6 582 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 SLC38A8A6NNN8 435 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 SYN3O14994 580 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 SCAMP1O15126 338 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 INPPL1O15357 1258 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 LRCH4O75427 683 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 INHBAP08476 426 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 CYP3A5P20815 502 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 PROZP22891 400 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 RBL1P28749 1068 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 MATKP42679 507 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 ABCG1P45844 678 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 SEC13P55735 322 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 OXCT1P55809 520 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 ERVFC1P60507 584 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 RHOAP61586 193 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 PRAMEP78395 509 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 THOC5Q13769 683 aaKnown RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 TFDP3Q5H9I0 405 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 BZW1Q7L1Q6 419 aaKnown RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 TMEM139Q8IV31 216 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 CHPFQ8IZ52 775 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 TBC1D31Q96DN5 1066 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 THOC1Q96FV9 657 aaKnown RBP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms