RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 CNOT8Q9UFF9 292 aaKnown RBP5.48□□□□□ -1.53
SPG11-220ENST00000559933 NUDT5Q9UKK9 219 aa5.48□□□□□ -1.53
SPG11-220ENST00000559933 PACSIN2Q9UNF0 486 aaPredicted RBP5.48□□□□□ -1.53
SPG11-220ENST00000559933 RAXQ9Y2V3 346 aa5.48□□□□□ -1.53
SPG11-220ENST00000559933 PCDHB5Q9Y5E4 795 aa5.48□□□□□ -1.53
SPG11-220ENST00000559933 BACE2Q9Y5Z0 518 aa5.48□□□□□ -1.53
SPG11-220ENST00000559933 BZW2Q9Y6E2 419 aaKnown RBP5.48□□□□□ -1.53
SPG11-220ENST00000559933 GREB1Q4ZG55 1949 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 A0A1W2PQH9 124 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 ARHGEF37A1IGU5 675 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 CARNS1A5YM72 827 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 EREGO14944 169 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 MDM4O15151 490 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 CCL16O15467 120 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 NRDCO43847 1150 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 EIF4EBP3O60516 100 aaPredicted RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 RTN2O75298 545 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 TADA3O75528 432 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 RFPL2O75678 378 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 WISP1O95388 367 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 FTCDO95954 541 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 H2AFZP0C0S5 128 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 FAM163BP0C2L3 166 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 TMEM253P0C7T8 217 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 SETSIPP0DME0 302 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 ACPPP15309 386 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 TCF4P15884 667 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 GJA1P17302 382 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 GJC1P36383 396 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 FLT3P36888 993 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 NRIP1P48552 1158 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 DNA2P51530 1060 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 CLCN4P51793 760 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 ATXN1P54253 815 aaKnown RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 RNASE9P60153 205 aaKnown RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 RPL7AP62424 266 aaKnown RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 NTHL1P78549 312 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 SMAD3P84022 425 aaKnown RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 ZNF252P-AS1Q0IIN9 211 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 C19orf57Q0VDD7 668 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 MAMLD1Q13495 774 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 SPA17Q15506 151 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 C15orf59Q2T9L4 293 aaPredicted RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 TCEAL5Q5H9L2 206 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 OTUD1Q5VV17 481 aaPredicted RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 DNAJC24Q6P3W2 148 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 TRIM72Q6ZMU5 477 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 C4orf50Q6ZRC1 276 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 Q6ZS46 218 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 H2AFVQ71UI9 128 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 ZSCAN30Q86W11 494 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 PHF13Q86YI8 300 aaPredicted RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 TTC39CQ8N584 583 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 C12orf76Q8N812 135 aaPredicted RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 MRPL43Q8N983 215 aaKnown RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 TMEM102Q8N9M5 508 aaPredicted RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 ST13P5Q8NFI4 369 aaPredicted RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 ZNF564Q8TBZ8 553 aaPredicted RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 SPATA18Q8TC71 538 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 ACSF2Q96CM8 615 aaPredicted RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 C16orf45Q96MC5 204 aaPredicted RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 CFAP57Q96MR6 1250 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 LHX5Q9H2C1 402 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 CHRDQ9H2X0 955 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 SYNCQ9H7C4 482 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 NMUR1Q9HB89 426 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 RXFP1Q9HBX9 757 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 CSNK1G1Q9HCP0 422 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 MAN1C1Q9NR34 630 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 HCFC1R1Q9NWW0 138 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 OSER1Q9NX31 292 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 CALCOCO1Q9P1Z2 691 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 CTTNBP2NLQ9P2B4 639 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 AFF4Q9UHB7 1163 aaKnown RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 EGFL7Q9UHF1 273 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 FBXW11Q9UKB1 542 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 MAGED2Q9UNF1 606 aaPredicted RBP5.47□□□□□ -1.53
SPG11-220ENST00000559933 LZTS1Q9Y250 596 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 RWDD3Q9Y3V2 267 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 CEP83Q9Y592 693 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 INSL5Q9Y5Q6 135 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 C5orf42Q9H799 3197 aa5.47□□□□□ -1.53
SPG11-220ENST00000559933 OBSL1O75147 1896 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 SYNJ2BP-COX16A0A087WUM0 186 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 GRID2IPA4D2P6 1211 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 ANKRD62A6NC57 917 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 SLC38A8A6NNN8 435 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 YJEFN3A6XGL0 299 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 E7ENQ6 273 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 PRRG1O14668 218 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 CCP110O43303 1012 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 MSI1O43347 362 aaKnown RBP5.46□□□□□ -1.54
SPG11-220ENST00000559933 FZD6O60353 706 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 BUB1BO60566 1050 aaPredicted RBP5.46□□□□□ -1.54
SPG11-220ENST00000559933 PALMO75781 387 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 ABLIM3O94929 683 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 IPO7O95373 1038 aaKnown RBP5.46□□□□□ -1.54
SPG11-220ENST00000559933 GLP2RO95838 553 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 GLUD1P00367 558 aa5.46□□□□□ -1.54
SPG11-220ENST00000559933 CYP1A2P05177 515 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms