RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 FAM170AA1A519 330 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 CDX4O14627 284 aaPredicted RBP18.49■□□□□ 0.55
HDDC3-205ENST00000559898 GIPC1O14908 333 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 MAP3K13O43283 966 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 LETM1O95202 739 aaPredicted RBP18.49■□□□□ 0.55
HDDC3-205ENST00000559898 GNA14O95837 355 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 IGLV3-27P01718 113 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 HLA-EP13747 358 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 HLA-FP30511 346 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 RPL34P49207 117 aaKnown RBP18.49■□□□□ 0.55
HDDC3-205ENST00000559898 ZNF234Q14588 700 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 TAF5Q15542 800 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 ARHGAP44Q17R89 818 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 FUT11Q495W5 492 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 PREPLQ4J6C6 727 aaPredicted RBP18.49■□□□□ 0.55
HDDC3-205ENST00000559898 FAM133BQ5BKY9 247 aaKnown RBP18.49■□□□□ 0.55
HDDC3-205ENST00000559898 SYPL2Q5VXT5 272 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 DPY19L2P1Q6NXN4 242 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 LPCAT2Q7L5N7 544 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 CACUL1Q86Y37 369 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 CYB5D2Q8WUJ1 264 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 MKRN2Q9H000 416 aaKnown RBP18.49■□□□□ 0.55
HDDC3-205ENST00000559898 CLSTN2Q9H4D0 955 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 STOML2Q9UJZ1 356 aa18.49■□□□□ 0.55
HDDC3-205ENST00000559898 HBS1LQ9Y450 684 aaKnown RBP18.49■□□□□ 0.55
HDDC3-205ENST00000559898 KCNJ18B7U540 433 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 PAPSS1O43252 624 aaPredicted RBP18.48■□□□□ 0.55
HDDC3-205ENST00000559898 CETN1Q12798 172 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 DPCR1Q3MIW9 517 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 IL31Q6EBC2 164 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 NUDT18Q6ZVK8 323 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 ANKS1BQ7Z6G8 1248 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 WDTC1Q8N5D0 677 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 DQX1Q8TE96 717 aaKnown RBP18.48■□□□□ 0.55
HDDC3-205ENST00000559898 ZNF606Q8WXB4 792 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 SPACA7Q96KW9 195 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 FCRL2Q96LA5 508 aaPredicted RBP18.48■□□□□ 0.55
HDDC3-205ENST00000559898 PRICKLE1Q96MT3 831 aaPredicted RBP18.48■□□□□ 0.55
HDDC3-205ENST00000559898 CIPCQ9C0C6 399 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 ST7Q9NRC1 585 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 ELOVL2Q9NXB9 296 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 PCDH15Q96QU1 1955 aa18.48■□□□□ 0.55
HDDC3-205ENST00000559898 E5RJQ4 531 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 ADRB1P08588 477 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 NCAM1P13591 858 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 PON1P27169 355 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 HARS2P49590 506 aaKnown RBP18.47■□□□□ 0.55
HDDC3-205ENST00000559898 RPL6Q02878 288 aaKnown RBP18.47■□□□□ 0.55
HDDC3-205ENST00000559898 ENPP2Q13822 863 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 N4BP2L1Q5TBK1 243 aaPredicted RBP18.47■□□□□ 0.55
HDDC3-205ENST00000559898 KIAA1324Q6UXG2 1013 aaKnown RBP18.47■□□□□ 0.55
HDDC3-205ENST00000559898 TAC4Q86UU9 113 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 OR2I1PQ8NGU4 316 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 IRGQQ8WZA9 623 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 HSFY1Q96LI6 401 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 CNTNAP3BQ96NU0 1288 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 SLC4A5Q9BY07 1137 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 CNTNAP3Q9BZ76 1288 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 MTG2Q9H4K7 406 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 ABCB8Q9NUT2 735 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 PILRBQ9UKJ0 227 aa18.47■□□□□ 0.55
HDDC3-205ENST00000559898 KHNYNO15037 678 aaKnown RBP18.46■□□□□ 0.55
HDDC3-205ENST00000559898 THAP12O43422 761 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 TBL1XO60907 577 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 CYBBP04839 570 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 MAOBP27338 520 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 GNA15P30679 374 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 CD70P32970 193 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 USP8P40818 1118 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 NUMBP49757 651 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 COPAP53621 1224 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 TBX4P57082 545 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 STILQ15468 1287 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 MPPE1Q53F39 396 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 TRIM61Q5EBN2 209 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 ADGRF1Q5T601 910 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 PIK3R6Q5UE93 754 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 LYSMD4Q5XG99 296 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 SDE2Q6IQ49 451 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 ADIPOR2Q86V24 386 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 C11orf74Q86VG3 221 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 PASD1Q8IV76 773 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 TMA16Q96EY4 203 aaKnown RBP18.46■□□□□ 0.55
HDDC3-205ENST00000559898 LSM14BQ9BX40 385 aaKnown RBP18.46■□□□□ 0.55
HDDC3-205ENST00000559898 STIM2Q9P246 746 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 NUMA1Q14980 2115 aa18.46■□□□□ 0.55
HDDC3-205ENST00000559898 CNOT1A5YKK6 2376 aaKnown RBP18.45■□□□□ 0.54
HDDC3-205ENST00000559898 ACSL4O60488 711 aa18.45■□□□□ 0.54
HDDC3-205ENST00000559898 RPS24P62847 133 aaKnown RBP18.45■□□□□ 0.54
HDDC3-205ENST00000559898 ZNF33AQ06730 810 aa18.45■□□□□ 0.54
HDDC3-205ENST00000559898 PTPRNQ16849 979 aa18.45■□□□□ 0.54
HDDC3-205ENST00000559898 MIIPQ5JXC2 388 aa18.45■□□□□ 0.54
HDDC3-205ENST00000559898 MMS22LQ6ZRQ5 1243 aa18.45■□□□□ 0.54
HDDC3-205ENST00000559898 CHST9Q7L1S5 443 aa18.45■□□□□ 0.54
HDDC3-205ENST00000559898 KIAA0907Q7Z7F0 614 aaPredicted RBP18.45■□□□□ 0.54
HDDC3-205ENST00000559898 FAM149B1Q96BN6 582 aa18.45■□□□□ 0.54
HDDC3-205ENST00000559898 SLC39A13Q96H72 371 aa18.45■□□□□ 0.54
HDDC3-205ENST00000559898 LMLNQ96KR4 655 aa18.45■□□□□ 0.54
HDDC3-205ENST00000559898 NUCKS1Q9H1E3 243 aaKnown RBP18.45■□□□□ 0.54
HDDC3-205ENST00000559898 PLCB1Q9NQ66 1216 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms