RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 DUS2Q9NX74 493 aaKnown RBP9.59□□□□□ -0.87
LDLR-210ENST00000559340 COX16Q9P0S2 106 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 PPP2R2CQ9Y2T4 447 aa9.59□□□□□ -0.87
LDLR-210ENST00000559340 REXO2Q9Y3B8 237 aaKnown RBP9.59□□□□□ -0.87
LDLR-210ENST00000559340 MIA3Q5JRA6 1907 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 KCNU1A8MYU2 1149 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 CHADO15335 359 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 MSI1O43347 362 aaKnown RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 ACSL4O60488 711 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 NFATC1O95644 943 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 IGLV3-27P01718 113 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 KRT7P08729 469 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 SP100P23497 879 aaPredicted RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 CORO1AP31146 461 aaKnown RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 VIPR2P41587 438 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 SSR1P43307 286 aaKnown RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 PFKPQ01813 784 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 EIF4EBP2Q13542 120 aaPredicted RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 HTR4Q13639 388 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 ZNF77Q15935 545 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 C15orf59Q2T9L4 293 aaPredicted RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 EFHC2Q5JST6 749 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 ADGRF1Q5T601 910 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 PARM1Q6UWI2 310 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 LRRC31Q6UY01 552 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 BNIPLQ7Z465 357 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 SLFN11Q7Z7L1 901 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 PSTKQ8IV42 348 aaKnown RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 DENND1CQ8IV53 801 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 CCDC117Q8IWD4 279 aaPredicted RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 CPXM2Q8N436 756 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 ZNF557Q8N988 423 aaPredicted RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 TTC16Q8NEE8 873 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 KIAA1524Q8TCG1 905 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 CSGALNACT1Q8TDX6 532 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 OSCP1Q8WVF1 389 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 NTAN1Q96AB6 310 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 ZFRQ96KR1 1074 aaKnown RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 FCRL2Q96LA5 508 aaPredicted RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 C1orf74Q96LT6 269 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 ZNF830Q96NB3 372 aaPredicted RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 ALS2CR12Q96Q35 445 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 TKTL2Q9H0I9 626 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 SMG9Q9H0W8 520 aaKnown RBP9.58□□□□□ -0.88
LDLR-210ENST00000559340 BRD9Q9H8M2 597 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 KCNK12Q9HB15 430 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 OSGEPQ9NPF4 335 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 PIGVQ9NUD9 493 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 ARHGEF38Q9NXL2 777 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 DONSONQ9NYP3 566 aa9.58□□□□□ -0.88
LDLR-210ENST00000559340 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.58□□□□□ -0.88
LDLR-210ENST00000559340 C19orf67A6NJJ6 358 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 TMEM110-MUSTN1A8MSY1 372 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 F5H5T6 163 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 PI4K2BG5E9Z4 385 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 NRG2O14511 850 aaPredicted RBP9.57□□□□□ -0.88
LDLR-210ENST00000559340 SPOPO43791 374 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 PRAMEF12O95522 483 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 MOCS2O96007 188 aaPredicted RBP9.57□□□□□ -0.88
LDLR-210ENST00000559340 ADH1CP00326 375 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 FCARP24071 287 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 MIPP30301 263 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 GDI1P31150 447 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 HTR7P34969 479 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 ADRA1BP35368 520 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 CETN2P41208 172 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 HDAC4P56524 1084 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 OGDHQ02218 1023 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 ZP2Q05996 745 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 FCHO2Q0JRZ9 810 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 TDGQ13569 410 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 PREPLQ4J6C6 727 aaPredicted RBP9.57□□□□□ -0.88
LDLR-210ENST00000559340 MPPE1Q53F39 396 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 RABGAP1LQ5R372 815 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 ZFYVE27Q5T4F4 411 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 ERMARDQ5T6L9 678 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 TRNP1Q6NT89 227 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 C11orf63Q6NUN7 778 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 VITQ6UXI7 678 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 Q6ZNB5 142 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 DAAM2Q86T65 1068 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 MAP7D3Q8IWC1 876 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 CPA6Q8N4T0 437 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 TPCN2Q8NHX9 752 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 TEKT4Q8WW24 435 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 FGF14Q92915 247 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 ATP2A3Q93084 1043 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 KXD1Q9BQD3 176 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 LACRTQ9GZZ8 138 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 OSBPL2Q9H1P3 480 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 KCNF1Q9H3M0 494 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 RETREG1Q9H6L5 497 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 TRPV5Q9NQA5 729 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 STIM2Q9P246 746 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 STOML2Q9UJZ1 356 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 AMFRQ9UKV5 643 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 AGO1Q9UL18 857 aaKnown RBP9.57□□□□□ -0.88
LDLR-210ENST00000559340 USP18Q9UMW8 372 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 GUCA1BQ9UMX6 200 aa9.57□□□□□ -0.88
LDLR-210ENST00000559340 CCL26Q9Y258 94 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms