RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 VPS52Q8N1B4 723 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 TMEM86AQ8N2M4 240 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 KLHDC9Q8NEP7 349 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 OR10T2Q8NGX3 314 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 TFB1MQ8WVM0 346 aaKnown RBP10.46□□□□□ -0.73
TMEM260-211ENST00000556648 SLC44A1Q8WWI5 657 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 HTR3CQ8WXA8 447 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 RMDN2Q96LZ7 410 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 ADAM2Q99965 735 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 PPCSQ9HAB8 311 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 SLCO1B3Q9NPD5 702 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 RNF186Q9NXI6 227 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.46□□□□□ -0.73
TMEM260-211ENST00000556648 SEPT10Q9P0V9 454 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 FETUBQ9UGM5 382 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 ZC3H7BQ9UGR2 993 aaKnown RBP10.46□□□□□ -0.73
TMEM260-211ENST00000556648 CDH9Q9ULB4 789 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 STAP1Q9ULZ2 295 aa10.46□□□□□ -0.73
TMEM260-211ENST00000556648 SMG5Q9UPR3 1016 aaKnown RBP10.46□□□□□ -0.73
TMEM260-211ENST00000556648 RNF103O00237 685 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 DCLK1O15075 740 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 B3GAT3O94766 335 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 NCAM1P13591 858 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 YY1P25490 414 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 MAGEA3P43357 314 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 MGAT5Q09328 741 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 SPARCL1Q14515 664 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 PRKD1Q15139 912 aaPredicted RBP10.46□□□□□ -0.74
TMEM260-211ENST00000556648 SMAD1Q15797 465 aaKnown RBP10.46□□□□□ -0.74
TMEM260-211ENST00000556648 LACTB2Q53H82 288 aaPredicted RBP10.46□□□□□ -0.74
TMEM260-211ENST00000556648 FAM133BQ5BKY9 247 aaKnown RBP10.46□□□□□ -0.74
TMEM260-211ENST00000556648 ANKRD20A2Q5SQ80 823 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 ANKRD20A1Q5TYW2 823 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 ANKRD20A3Q5VUR7 823 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 TRMT10BQ6PF06 316 aaKnown RBP10.46□□□□□ -0.74
TMEM260-211ENST00000556648 LVRNQ6Q4G3 990 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 UNC5AQ6ZN44 842 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 RFX8Q6ZV50 586 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 RPAINQ86UA6 219 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 LRRTM3Q86VH5 581 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 PPM1NQ8N819 430 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 ANKS4BQ8N8V4 417 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 ANKLE1Q8NAG6 615 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 DEPDC1BQ8WUY9 529 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 CYTH2Q99418 400 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 KDM4CQ9H3R0 1056 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 SENP1Q9P0U3 644 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 SLC17A6Q9P2U8 582 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 FRMPD3Q5JV73 1810 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 NLRC5Q86WI3 1866 aa10.46□□□□□ -0.74
TMEM260-211ENST00000556648 A0A0A0MRY4 1105 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 WDR91A4D1P6 747 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 EEF2KO00418 725 aaKnown RBP10.45□□□□□ -0.74
TMEM260-211ENST00000556648 CAPN9O14815 690 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 HGSO14964 777 aaPredicted RBP10.45□□□□□ -0.74
TMEM260-211ENST00000556648 AOC2O75106 756 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 UBOX5O94941 541 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 FBXO21O94952 628 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 LTFP02788 710 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 FAM163BP0C2L3 166 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 CSH1P0DML2 217 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 CSH2P0DML3 217 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 ATP2A2P16615 1042 aaKnown RBP10.45□□□□□ -0.74
TMEM260-211ENST00000556648 TPSB2P20231 275 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 BDNFP23560 247 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 CRADDP78560 199 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 AP1B1Q10567 949 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 OLIG2Q13516 323 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 SEMA5AQ13591 1074 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 BMPR2Q13873 1038 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 MTFR1Q15390 333 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 TPSAB1Q15661 275 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 TTC31Q49AM3 519 aaPredicted RBP10.45□□□□□ -0.74
TMEM260-211ENST00000556648 TRPM8Q7Z2W7 1104 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 CTAGE3PQ8IX95 158 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 NPWQ8N729 165 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 BANPQ8N9N5 519 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 MCUQ8NE86 351 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 TCP10LQ8TDR4 215 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 P2RY11Q96G91 374 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 SMARCD1Q96GM5 515 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 SIGLEC10Q96LC7 697 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 SPATA13Q96N96 652 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 PGLYRP2Q96PD5 576 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 PKMYT1Q99640 499 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 PRDM12Q9H4Q4 367 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 ALG13Q9NP73 1137 aaKnown RBP10.45□□□□□ -0.74
TMEM260-211ENST00000556648 PNPLA8Q9NP80 782 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 RCOR3Q9P2K3 495 aaPredicted RBP10.45□□□□□ -0.74
TMEM260-211ENST00000556648 PRKAG3Q9UGI9 489 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 PTCH2Q9Y6C5 1203 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 MAD1L1Q9Y6D9 718 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 COL4A4P53420 1690 aaPredicted RBP10.45□□□□□ -0.74
TMEM260-211ENST00000556648 ODC1P11926 461 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 ERCC2P18074 760 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 PSMB4P28070 264 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 RPL9P32969 192 aaKnown RBP10.45□□□□□ -0.74
TMEM260-211ENST00000556648 ADRA1BP35368 520 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 PGFP49763 221 aa10.45□□□□□ -0.74
TMEM260-211ENST00000556648 SLC18A1P54219 525 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms