RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 CDH5P33151 784 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 TBX4P57082 545 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 SNX16P57768 344 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 YWHAZP63104 245 aaKnown RBP16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 SPEM2Q0P670 501 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 PUM1Q14671 1186 aaKnown RBP eCLIP16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 FAM133BQ5BKY9 247 aaKnown RBP16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 CCDC183Q5T5S1 534 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 SDE2Q6IQ49 451 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 KIAA0907Q7Z7F0 614 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 CHPFQ8IZ52 775 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 WDTC1Q8N5D0 677 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 WFIKKN2Q8TEU8 576 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 DDI1Q8WTU0 396 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 FAM149B1Q96BN6 582 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 RMDN1Q96DB5 314 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 FCRL2Q96LA5 508 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 NOX5Q96PH1 765 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 SLC2A13Q96QE2 648 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 CPXM1Q96SM3 734 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 DDX50Q9BQ39 737 aaKnown RBP16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 THAP10Q9P2Z0 257 aaPredicted RBP16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 DNAH14Q0VDD8 3507 aa16.7■□□□□ 0.26
CCDC88C-209ENST00000554872 TCRBV21S2A2A0A5A6 115 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 ACSL4O60488 711 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 ZNF806P0C7X5 589 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 USP8P40818 1118 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 FOXK2Q01167 660 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 MTA1Q13330 715 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 STX1AQ16623 288 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 GEN1Q17RS7 908 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 PIK3R6Q5UE93 754 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 PRR23CQ6ZRP0 262 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 TAC4Q86UU9 113 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 SLC47A2Q86VL8 602 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 ZDHHC17Q8IUH5 632 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 UCMAQ8WVF2 138 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 BHMTQ93088 406 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 PPP1R13BQ96KQ4 1090 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 SPACA7Q96KW9 195 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 USP18Q9UMW8 372 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 NAALADL1Q9UQQ1 740 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 CEP83Q9Y592 693 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 FHOD1Q9Y613 1164 aa16.69■□□□□ 0.26
CCDC88C-209ENST00000554872 HSF2BPO75031 334 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 GABRG2P18507 467 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 KRT9P35527 623 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 SCNN1AP37088 669 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 LIMK1P53667 647 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 MYL5Q02045 173 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 DRAP1Q14919 205 aaPredicted RBP16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 KRT31Q15323 416 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 MAP7D1Q3KQU3 841 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 HSP90AA4PQ58FG1 418 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 EFHC1Q5JVL4 640 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 SASS6Q6UVJ0 657 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 OLFML1Q6UWY5 402 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 SLC26A9Q7LBE3 791 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 METTL3Q86U44 580 aaKnown RBP16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 ZNF397Q8NF99 534 aaPredicted RBP16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 NETO1Q8TDF5 533 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 IPO4Q8TEX9 1081 aaKnown RBP16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 TMA16Q96EY4 203 aaKnown RBP16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 ACOX2Q99424 681 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 STK33Q9BYT3 514 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 TPSD1Q9BZJ3 242 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 ZDHHC4Q9NPG8 344 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 TMEM51Q9NW97 253 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 ELOVL2Q9NXB9 296 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 CLEC4EQ9ULY5 219 aa16.68■□□□□ 0.26
CCDC88C-209ENST00000554872 MUC22E2RYF6 1773 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 BCLAF3A2AJT9 711 aaKnown RBP16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 LRRC10BA6NIK2 292 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 F8VZ95 297 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 ZNF217O75362 1048 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 LSM8O95777 96 aaKnown RBP16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 TPM2P07951 284 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 CYP11B1P15538 503 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 HLA-FP30511 346 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 MPLP40238 635 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 SYPL2Q5VXT5 272 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 NADSYN1Q6IA69 706 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 C11orf57Q6ZUT1 292 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 HJURPQ8NCD3 748 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 C1orf131Q8NDD1 294 aaKnown RBP16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 HMGB4Q8WW32 186 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 DDX1Q92499 740 aaKnown RBP16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 GANQ9H2C0 597 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 ARRDC1-AS1Q9H2J1 176 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 VPS45Q9NRW7 570 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 TAB2Q9NYJ8 693 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 BCCIPQ9P287 314 aaKnown RBP eCLIP16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 LIMA1Q9UHB6 759 aaKnown RBP16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 STON1Q9Y6Q2 735 aa16.67■□□□□ 0.26
CCDC88C-209ENST00000554872 CAPN9O14815 690 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 DCLK1O15075 740 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 TRUB2O95900 331 aaKnown RBP16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 SLC2A3P11169 496 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 ZNF18P17022 549 aa16.66■□□□□ 0.26
CCDC88C-209ENST00000554872 SLC6A4P31645 630 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms