RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 TJAP1Q5JTD0 557 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 BRMS1LQ5PSV4 323 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 ZNF662Q6ZS27 426 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 BBS7Q8IWZ6 715 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 OSCP1Q8WVF1 389 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 AZIN2Q96A70 460 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 CALR3Q96L12 384 aaKnown RBP12.71□□□□□ -0.37
SHMT2-209ENST00000553949 TRMT61BQ9BVS5 477 aaKnown RBP12.71□□□□□ -0.37
SHMT2-209ENST00000553949 TKTL2Q9H0I9 626 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 ANLNQ9NQW6 1124 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 DUS2Q9NX74 493 aaKnown RBP12.71□□□□□ -0.37
SHMT2-209ENST00000553949 ARHGEF38Q9NXL2 777 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 TBC1D14Q9P2M4 693 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 SLC12A6Q9UHW9 1150 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 XPO7Q9UIA9 1087 aaKnown RBP12.71□□□□□ -0.37
SHMT2-209ENST00000553949 ZNF510Q9Y2H8 683 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 WNT6Q9Y6F9 365 aa12.71□□□□□ -0.37
SHMT2-209ENST00000553949 DOCK8Q8NF50 2099 aa12.71□□□□□ -0.38
SHMT2-209ENST00000553949 MACROD2A1Z1Q3 448 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 I6L893 689 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-209ENST00000553949 SLC9A3R1O14745 358 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-209ENST00000553949 ACSL4O60488 711 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 BUB1BO60566 1050 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-209ENST00000553949 LRCH4O75427 683 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 LATS1O95835 1130 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 MIPP30301 263 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 GDI1P31150 447 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 PCK1P35558 622 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 IFNAR2P48551 515 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 MTA1Q13330 715 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 ARHGAP29Q52LW3 1261 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 DAB2IPQ5VWQ8 1189 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 SCYL2Q6P3W7 929 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 SLC44A3Q8N4M1 653 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 CCDC185Q8N715 623 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 ATP6V0D2Q8N8Y2 350 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 TPCN2Q8NHX9 752 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 ASIC4Q96FT7 647 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 ZFYVE19Q96K21 471 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 BTN2A3PQ96KV6 586 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 NCAPGQ9BPX3 1015 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 FAM83CQ9BQN1 747 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 LINC00597Q9H2U6 94 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 STOML2Q9UJZ1 356 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 PYCARDQ9ULZ3 195 aa12.7□□□□□ -0.38
SHMT2-209ENST00000553949 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.7□□□□□ -0.387e-7■■□□□ 12.7
SHMT2-209ENST00000553949 CHADO15335 359 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 KRT86O43790 486 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 PRPSAP2O60256 369 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 PAGE1O75459 146 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 TCF4P15884 667 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 ADRA1BP35368 520 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 TDGQ13569 410 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 PDGFRLQ15198 375 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 IFI16Q16666 785 aaKnown RBP12.69□□□□□ -0.38
SHMT2-209ENST00000553949 EML3Q32P44 896 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 ARL13BQ3SXY8 428 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 ADGRF1Q5T601 910 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 TRIM68Q6AZZ1 485 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 NADSYN1Q6IA69 706 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 SLFN11Q7Z7L1 901 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 CPNE8Q86YQ8 564 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 GJD3Q8N144 294 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 RNF10Q8N5U6 811 aaKnown RBP12.69□□□□□ -0.38
SHMT2-209ENST00000553949 NTAN1Q96AB6 310 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 OTUB2Q96DC9 234 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 NECAB3Q96P71 396 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-209ENST00000553949 BRD9Q9H8M2 597 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 LZTFL1Q9NQ48 299 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 TMPRSS4Q9NRS4 437 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 PCSK1NQ9UHG2 260 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 USP18Q9UMW8 372 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 HS3ST4Q9Y661 456 aa12.69□□□□□ -0.38
SHMT2-209ENST00000553949 NUP210Q8TEM1 1887 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-209ENST00000553949 GOLGA6L7A0A1B0GV03 622 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 GRID2IPA4D2P6 1211 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 ARNTLO00327 626 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 ZSCAN12O43309 604 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 MOCS3O95396 460 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 ARSAP15289 507 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 COMTP21964 271 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 SLC6A4P31645 630 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 CHKAP35790 457 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 SLC1A1P43005 524 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 SSR1P43307 286 aaKnown RBP12.68□□□□□ -0.38
SHMT2-209ENST00000553949 AIF1P55008 147 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 SCAPQ12770 1279 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 FAM133BQ5BKY9 247 aaKnown RBP12.68□□□□□ -0.38
SHMT2-209ENST00000553949 MS4A13Q5J8X5 152 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 PIK3R6Q5UE93 754 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 C11orf63Q6NUN7 778 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 RNF135Q8IUD6 432 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 FAM217AQ8IXS0 508 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 ADGRG2Q8IZP9 1017 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 CPXM2Q8N436 756 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 IRF7Q92985 503 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 ATP2A3Q93084 1043 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 C1orf74Q96LT6 269 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 HAPLN3Q96S86 360 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 PEBP4Q96S96 227 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms